Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20529
         (541 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...   142   2e-34
Z70681-3|CAA94579.2|  403|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AY305847-1|AAR11991.1|  461|Caenorhabditis elegans nuclear recep...    28   3.7  
AF099915-4|AAC68773.2|  461|Caenorhabditis elegans Nuclear hormo...    28   3.7  
Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score =  142 bits (343), Expect = 2e-34
 Identities = 71/91 (78%), Positives = 78/91 (85%), Gaps = 1/91 (1%)
 Frame = +3

Query: 249 QRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 428
           + FEIID  L  +L DEVLKI PVQKQT AGQRTRFKAFVAIGD+ GH+GLGVKCSKEVA
Sbjct: 86  KEFEIIDA-LCSNLKDEVLKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVA 144

Query: 429 TAIRGAIILAKLSVLPVRRGYWGNNIG-SHT 518
           TAIRGAI+ AKL+V+PVRRGYWGN IG  HT
Sbjct: 145 TAIRGAIVAAKLAVVPVRRGYWGNKIGLPHT 175



 Score = 54.0 bits (124), Expect = 7e-08
 Identities = 25/36 (69%), Positives = 28/36 (77%)
 Frame = +1

Query: 148 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKD 255
           E + EW PVTKLGRLV+E KI  LE IYL SLPIK+
Sbjct: 52  EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKE 87



 Score = 28.3 bits (60), Expect = 3.7
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = +2

Query: 512 PHTVPCKVTG 541
           PHTVPCKVTG
Sbjct: 173 PHTVPCKVTG 182


>Z70681-3|CAA94579.2|  403|Caenorhabditis elegans Hypothetical
           protein C30F2.3 protein.
          Length = 403

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 488 TSSNW*NRQLSKDNSASNGSG 426
           TS+NW N QL   NS + GSG
Sbjct: 309 TSTNWQNNQLGVSNSGAPGSG 329


>AY305847-1|AAR11991.1|  461|Caenorhabditis elegans nuclear receptor
           NHR-121 protein.
          Length = 461

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +2

Query: 302 SKDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 445
           +++  CT  NTCR  +  + IC   R  +    G E    Q  R C++ R
Sbjct: 53  NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102


>AF099915-4|AAC68773.2|  461|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 121 protein.
          Length = 461

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +2

Query: 302 SKDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 445
           +++  CT  NTCR  +  + IC   R  +    G E    Q  R C++ R
Sbjct: 53  NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102


>Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 368 NKCLETCALSGTCLFLYR-HDL*NLIIQGR 282
           ++CLE C +S  C F Y+  D+ N +I  R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315


>Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 368 NKCLETCALSGTCLFLYR-HDL*NLIIQGR 282
           ++CLE C +S  C F Y+  D+ N +I  R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,003,226
Number of Sequences: 27780
Number of extensions: 249826
Number of successful extensions: 788
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)