Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20529
(541 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 160 6e-40
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 159 8e-40
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 159 1e-39
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 159 1e-39
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 159 1e-39
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 159 1e-39
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 47 7e-06
At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 29 1.5
At3g01450.1 68416.m00069 expressed protein 29 2.0
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 3.5
At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putativ... 28 4.6
At5g35970.1 68418.m04332 DNA-binding protein, putative similar t... 27 6.1
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 160 bits (388), Expect = 6e-40
Identities = 72/91 (79%), Positives = 83/91 (91%), Gaps = 1/91 (1%)
Frame = +3
Query: 249 QRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 428
+ ++IID +GPSL DEV+KIMPVQKQTRAGQRTRFKAF+ +GD+NGH+GLGVKCSKEVA
Sbjct: 74 KEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVA 133
Query: 429 TAIRGAIILAKLSVLPVRRGYWGNNIGS-HT 518
TAIRGAIILAKLSV+P+RRGYWGN IG HT
Sbjct: 134 TAIRGAIILAKLSVVPIRRGYWGNKIGKPHT 164
Score = 59.3 bits (137), Expect = 2e-09
Identities = 24/35 (68%), Positives = 32/35 (91%)
Frame = +1
Query: 151 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKD 255
++++WVPVTKLGRLV+EGKI K+E IYL SLP+K+
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKE 75
Score = 30.3 bits (65), Expect = 0.86
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2
Query: 509 KPHTVPCKVTG 541
KPHTVPCKVTG
Sbjct: 161 KPHTVPCKVTG 171
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 159 bits (387), Expect = 8e-40
Identities = 73/91 (80%), Positives = 82/91 (90%), Gaps = 1/91 (1%)
Frame = +3
Query: 249 QRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 428
+ ++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA
Sbjct: 83 KEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 142
Query: 429 TAIRGAIILAKLSVLPVRRGYWGNNIGS-HT 518
TAIRGAIILAKLSV+PVRRGYWGN IG HT
Sbjct: 143 TAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 173
Score = 51.6 bits (118), Expect = 3e-07
Identities = 21/35 (60%), Positives = 29/35 (82%)
Frame = +1
Query: 151 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKD 255
++++WVPVTKLGRLV G I ++E IYL SLP+K+
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKE 84
Score = 30.3 bits (65), Expect = 0.86
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2
Query: 509 KPHTVPCKVTG 541
KPHTVPCKVTG
Sbjct: 170 KPHTVPCKVTG 180
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 159 bits (385), Expect = 1e-39
Identities = 73/91 (80%), Positives = 82/91 (90%), Gaps = 1/91 (1%)
Frame = +3
Query: 249 QRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 428
+ ++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA
Sbjct: 82 KEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 141
Query: 429 TAIRGAIILAKLSVLPVRRGYWGNNIGS-HT 518
TAIRGAIILAKLSV+PVRRGYWGN IG HT
Sbjct: 142 TAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 54.4 bits (125), Expect = 5e-08
Identities = 23/35 (65%), Positives = 29/35 (82%)
Frame = +1
Query: 151 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKD 255
++ +WVPVTKLGRLV + KI KLE IYL SLP+K+
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKE 83
Score = 30.3 bits (65), Expect = 0.86
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2
Query: 509 KPHTVPCKVTG 541
KPHTVPCKVTG
Sbjct: 169 KPHTVPCKVTG 179
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 159 bits (385), Expect = 1e-39
Identities = 73/91 (80%), Positives = 82/91 (90%), Gaps = 1/91 (1%)
Frame = +3
Query: 249 QRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 428
+ ++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA
Sbjct: 82 KEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 141
Query: 429 TAIRGAIILAKLSVLPVRRGYWGNNIGS-HT 518
TAIRGAIILAKLSV+PVRRGYWGN IG HT
Sbjct: 142 TAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 54.4 bits (125), Expect = 5e-08
Identities = 23/35 (65%), Positives = 29/35 (82%)
Frame = +1
Query: 151 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKD 255
++ +WVPVTKLGRLV + KI KLE IYL SLP+K+
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKE 83
Score = 30.3 bits (65), Expect = 0.86
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2
Query: 509 KPHTVPCKVTG 541
KPHTVPCKVTG
Sbjct: 169 KPHTVPCKVTG 179
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 159 bits (385), Expect = 1e-39
Identities = 73/91 (80%), Positives = 82/91 (90%), Gaps = 1/91 (1%)
Frame = +3
Query: 249 QRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 428
+ ++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA
Sbjct: 82 KEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 141
Query: 429 TAIRGAIILAKLSVLPVRRGYWGNNIGS-HT 518
TAIRGAIILAKLSV+PVRRGYWGN IG HT
Sbjct: 142 TAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 54.4 bits (125), Expect = 5e-08
Identities = 23/35 (65%), Positives = 29/35 (82%)
Frame = +1
Query: 151 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKD 255
++ +WVPVTKLGRLV + KI KLE IYL SLP+K+
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKE 83
Score = 30.3 bits (65), Expect = 0.86
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2
Query: 509 KPHTVPCKVTG 541
KPHTVPCKVTG
Sbjct: 169 KPHTVPCKVTG 179
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 159 bits (385), Expect = 1e-39
Identities = 73/91 (80%), Positives = 82/91 (90%), Gaps = 1/91 (1%)
Frame = +3
Query: 249 QRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 428
+ ++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA
Sbjct: 82 KEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 141
Query: 429 TAIRGAIILAKLSVLPVRRGYWGNNIGS-HT 518
TAIRGAIILAKLSV+PVRRGYWGN IG HT
Sbjct: 142 TAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 54.4 bits (125), Expect = 5e-08
Identities = 23/35 (65%), Positives = 29/35 (82%)
Frame = +1
Query: 151 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKD 255
++ +WVPVTKLGRLV + KI KLE IYL SLP+K+
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKE 83
Score = 30.3 bits (65), Expect = 0.86
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2
Query: 509 KPHTVPCKVTG 541
KPHTVPCKVTG
Sbjct: 169 KPHTVPCKVTG 179
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 47.2 bits (107), Expect = 7e-06
Identities = 19/62 (30%), Positives = 40/62 (64%)
Frame = +3
Query: 294 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 473
+ V+++ V K + G++ +F+A V +GD G++G+G +KEV A++ + I A+ +++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208
Query: 474 PV 479
V
Sbjct: 209 QV 210
>At3g18530.1 68416.m02357 expressed protein similar to unknown
protein GB:AAF24615 from [Arabidopsis thaliana]
Length = 297
Score = 29.5 bits (63), Expect = 1.5
Identities = 23/75 (30%), Positives = 33/75 (44%)
Frame = -1
Query: 511 LPMLLPQ*PLRTGKTDNLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPAR 332
L LL Q L++ + A R VA + H +P + P L P N R+R A
Sbjct: 163 LDRLLTQLLLKSSQDKRFVCEAAERALVAMTT-HVSPALLLPKLRPCLKNKSPRIRAKAS 221
Query: 331 VCFCTGMIFRTSSFR 287
CF +G + R + R
Sbjct: 222 ACF-SGCVPRLEAAR 235
>At3g01450.1 68416.m00069 expressed protein
Length = 326
Score = 29.1 bits (62), Expect = 2.0
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = -1
Query: 511 LPMLLPQ*PLRTGKTDNLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPAR 332
L +LL Q L++ + A + VA + H +P + P L P N R+R A
Sbjct: 163 LDLLLTQLLLKSSQDKRFVCEAAEKALVAMTA-HVSPALLLPKLQPFLKNRNPRIRAKAS 221
Query: 331 VCF 323
CF
Sbjct: 222 TCF 224
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 360 AFVAIGDNNGHIGLGVKCSKE 422
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
>At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putative
(UBP16) similar to ubiquitin-specific protease 16
GI:11993477 [Arabidopsis thaliana]
Length = 1008
Score = 27.9 bits (59), Expect = 4.6
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -3
Query: 512 ASDVVTPVTSSNW*NRQLSKDNSASNGSGDFLAAL 408
++D ++P+ SSN + L K SAS+ +G LA L
Sbjct: 403 STDALSPLDSSNLSHVTLPKSKSASSENGSMLAPL 437
>At5g35970.1 68418.m04332 DNA-binding protein, putative similar to
SWISS-PROT:Q60560 DNA-binding protein SMUBP-2
(Immunoglobulin MU binding protein 2, SMUBP-2)
[Mesocricetus auratus]
Length = 961
Score = 27.5 bits (58), Expect = 6.1
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 340 PARVCFCTGMIFRTSSFRDGPRKKSMISNL*LVKKTSK 227
P R FC+G+ +S + PR+KS +S+ KK K
Sbjct: 43 PTRKVFCSGVNGGSSVTKKKPRRKSNVSDKLRFKKIEK 80
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,393,482
Number of Sequences: 28952
Number of extensions: 236684
Number of successful extensions: 676
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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