Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20528
         (686 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...   177   7e-47
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...   173   9e-46
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...   134   5e-34
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   4.1  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    22   4.1  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    21   7.2  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   7.2  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   9.5  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   9.5  
EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport pe...    21   9.5  
EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport pe...    21   9.5  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   9.5  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   9.5  

>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score =  177 bits (431), Expect = 7e-47
 Identities = 71/86 (82%), Positives = 80/86 (93%)
 Frame = +1

Query: 250 IGCGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCSADGTR 429
           + CG+G+CI+KELFCNGKPDCKDESDEN+CTVE DPNRAPDCDP QCVLPDCFCSADGTR
Sbjct: 121 LSCGNGECIDKELFCNGKPDCKDESDENSCTVETDPNRAPDCDPTQCVLPDCFCSADGTR 180

Query: 430 IPGGIEPNQVPQMVTITFNGAVNVDN 507
           IPG +EP  VPQM+T+TFNGAVN+DN
Sbjct: 181 IPGQLEPANVPQMITLTFNGAVNIDN 206



 Score =  122 bits (295), Expect = 2e-30
 Identities = 49/59 (83%), Positives = 57/59 (96%)
 Frame = +3

Query: 510 DLYEQIFNGNRHNPNGCQIKGTFFVSHKYTNYAAVQELHRKGHEISVFSITHKDDPQYW 686
           DLYE+IFNGNR NPNGCQI+GTFFVSHKYTNY+AVQ+LHR+GHEI+VFS+THK+DP YW
Sbjct: 208 DLYEEIFNGNRANPNGCQIRGTFFVSHKYTNYSAVQDLHRRGHEIAVFSLTHKEDPNYW 266



 Score = 45.6 bits (103), Expect = 4e-07
 Identities = 19/24 (79%), Positives = 21/24 (87%)
 Frame = +2

Query: 182 VISEPRKVLPILKTDEPICPEGKL 253
           VI +PRKVLP  KTDEPICP+GKL
Sbjct: 98  VIEKPRKVLPNFKTDEPICPDGKL 121


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score =  173 bits (422), Expect = 9e-46
 Identities = 71/86 (82%), Positives = 79/86 (91%)
 Frame = +1

Query: 250 IGCGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCSADGTR 429
           + CG+G+CI+KELFCNGKPDCKDESDEN+CTVE DPNRA DCDP QCVLPDCFCSADGTR
Sbjct: 114 LSCGNGECIDKELFCNGKPDCKDESDENSCTVETDPNRALDCDPTQCVLPDCFCSADGTR 173

Query: 430 IPGGIEPNQVPQMVTITFNGAVNVDN 507
           IPG +EP  VPQM+T+TFNGAVNVDN
Sbjct: 174 IPGQLEPANVPQMITLTFNGAVNVDN 199



 Score =  122 bits (295), Expect = 2e-30
 Identities = 49/59 (83%), Positives = 57/59 (96%)
 Frame = +3

Query: 510 DLYEQIFNGNRHNPNGCQIKGTFFVSHKYTNYAAVQELHRKGHEISVFSITHKDDPQYW 686
           DLYE+IFNGNR NPNGCQI+GTFFVSHKYTNY+AVQ+LHR+GHEI+VFS+THK+DP YW
Sbjct: 201 DLYEEIFNGNRANPNGCQIRGTFFVSHKYTNYSAVQDLHRRGHEIAVFSLTHKEDPNYW 259



 Score = 43.2 bits (97), Expect = 2e-06
 Identities = 17/23 (73%), Positives = 20/23 (86%)
 Frame = +2

Query: 185 ISEPRKVLPILKTDEPICPEGKL 253
           + +PRKVLP  KTDEPICP+GKL
Sbjct: 92  LEKPRKVLPNFKTDEPICPDGKL 114


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score =  134 bits (325), Expect = 5e-34
 Identities = 54/86 (62%), Positives = 65/86 (75%)
 Frame = +1

Query: 250 IGCGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCSADGTR 429
           + CG G+CIE+ LFCNG+ DC D SDEN C ++ DPNRAP CDP  CVLPDCFCS DGT 
Sbjct: 122 LACGDGNCIERGLFCNGEKDCSDGSDENTCDIDNDPNRAPPCDPAVCVLPDCFCSEDGTT 181

Query: 430 IPGGIEPNQVPQMVTITFNGAVNVDN 507
           IPG +    VPQM+TITF+ A+N +N
Sbjct: 182 IPGDLPSKDVPQMITITFDDAINNNN 207



 Score =  109 bits (261), Expect = 3e-26
 Identities = 44/59 (74%), Positives = 52/59 (88%)
 Frame = +3

Query: 510 DLYEQIFNGNRHNPNGCQIKGTFFVSHKYTNYAAVQELHRKGHEISVFSITHKDDPQYW 686
           +LY++IFNG R NPNGC IK TFFVSHKYTNY+AVQE+HRKGHEI+V SITH DD ++W
Sbjct: 209 ELYKEIFNGKRKNPNGCDIKATFFVSHKYTNYSAVQEMHRKGHEIAVHSITHNDDERFW 267



 Score = 34.7 bits (76), Expect = 7e-04
 Identities = 13/22 (59%), Positives = 18/22 (81%)
 Frame = +2

Query: 188 SEPRKVLPILKTDEPICPEGKL 253
           ++ RKV P+L TDEP+CP+G L
Sbjct: 101 NKERKVKPLLITDEPLCPDGSL 122


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 295 NGKPDCKDESDENAC 339
           NGKP C  E D+  C
Sbjct: 880 NGKPTCWRECDKATC 894


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -3

Query: 63  NCLQPIIVVKQP 28
           NC QP++V+  P
Sbjct: 232 NCAQPVVVIMSP 243


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 308 SGLPLQNNSFSMQSPLPQ 255
           +G+PLQN   ++  P+ Q
Sbjct: 187 AGIPLQNPGLNLNPPVTQ 204


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +1

Query: 268 DCIEKELFCNGKPDCKDESDENACTVELD 354
           D I+ + FCNG     D      CT ++D
Sbjct: 545 DDIDPQQFCNGDNRPADCQQNCMCTHKVD 573


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 12/49 (24%), Positives = 17/49 (34%)
 Frame = +1

Query: 295 NGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCSADGTRIPGG 441
           N +P     S+      ++ PN  P+CD    V        D    P G
Sbjct: 117 NTQPPVTSSSNILQNLADITPNVTPNCDVKSSVCSPGSGHQDSRTSPSG 165


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 12/49 (24%), Positives = 17/49 (34%)
 Frame = +1

Query: 295 NGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCSADGTRIPGG 441
           N +P     S+      ++ PN  P+CD    V        D    P G
Sbjct: 117 NTQPPVTSSSNILQNLADITPNVTPNCDVKSSVCSPGSGHQDSRTSPSG 165


>EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport
           peptide isoform C protein.
          Length = 136

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 14  NRCTKGCFTT 43
           N C K CFTT
Sbjct: 83  NLCRKNCFTT 92


>EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport
           peptide isoform A protein.
          Length = 140

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 14  NRCTKGCFTT 43
           N C K CFTT
Sbjct: 83  NLCRKNCFTT 92


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = -1

Query: 449 GSIPPGIRVPSAEQKQSGR 393
           G +PP +  P ++++ +GR
Sbjct: 270 GGLPPQVPSPRSQRRYTGR 288


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 12/49 (24%), Positives = 17/49 (34%)
 Frame = +1

Query: 295 NGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCSADGTRIPGG 441
           N +P     S+      ++ PN  P+CD    V        D    P G
Sbjct: 117 NTQPPVTSSSNILQNLADITPNVTPNCDVKSSVCSPGSGHQDSRTSPSG 165


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,322
Number of Sequences: 336
Number of extensions: 3737
Number of successful extensions: 19
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)