Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20528
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    28   1.5  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    27   3.4  
SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces po...    27   3.4  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    26   4.4  
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    26   5.9  

>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/55 (21%), Positives = 22/55 (40%)
 Frame = +1

Query: 301 KPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCSADGTRIPGGIEPNQVPQ 465
           +P   D     A     DP++ P+ +P+          A    +  G+ P +VP+
Sbjct: 243 RPHPSDTIPPGASMARSDPSQVPESNPSAAAAVAAAAVAAAANLTNGVNPPEVPR 297


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -1

Query: 422 PSAEQKQSGRTHWLGSQSGALFGSSSTVQAFSSDSSLQSGLPLQNNSFSMQSPLP 258
           PS+    S  +    S S +   SSS+  + SS SS  S     ++S S  S +P
Sbjct: 155 PSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVP 209


>SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 391 VLPDCFCSADGTRIPGGIEPNQVPQMVTITFNGAVNVDNTIYMNKY 528
           +LP        T  PG ++   VP +  I F+GA N +  I + K+
Sbjct: 258 MLPHVQNGVKNTSWPGRLDIRSVPSLGDILFDGAHNKEAAIELAKF 303


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -1

Query: 350 SSTVQAFSSDSSLQSGLPLQNNSFSMQSPL--PQPIYLQDK*VRPFS 216
           SS  ++ SSD++   G PLQN  F   + +    P    DK   PFS
Sbjct: 652 SSDFESKSSDNTSLDGTPLQNTDFKKVATVEDDSPFDELDKFSSPFS 698


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 313 KDESDENACTVELDPNRAPDCDPNQCVLPDCFCSAD 420
           K +SD     VELD     + DP+  VLP+   ++D
Sbjct: 295 KSKSDRRKRLVELDAENENENDPSDFVLPNGQSNSD 330


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,836,519
Number of Sequences: 5004
Number of extensions: 58278
Number of successful extensions: 147
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)