Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20528
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0426 - 17451731-17451886,17451974-17452079,17452289-174523...    31   0.65 
12_02_0133 - 14057469-14057497,14057516-14057581,14057770-140583...    31   1.1  
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066     31   1.1  
05_07_0305 - 29097478-29097598,29097766-29097866,29098136-290982...    29   4.6  

>09_04_0426 -
           17451731-17451886,17451974-17452079,17452289-17452387,
           17452782-17452888,17452985-17453230,17454187-17454461,
           17454834-17454886,17455163-17455455
          Length = 444

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = +1

Query: 274 IEKELFCNGKPDCK-DESDENACTVELDPNRAPDCDPNQCVLPDCFCSADGTRIPGGIEP 450
           I  E+  N   +C+   SD  AC+  +D   + + DP     P C  + DG   P  I P
Sbjct: 232 ISDEVLANITKNCRFSPSDGKACSDAMDAFDSGNTDPYDIYGPVCINAPDGKFFPSRIVP 291

Query: 451 NQVP 462
              P
Sbjct: 292 GYDP 295


>12_02_0133 - 14057469-14057497,14057516-14057581,14057770-14058363,
            14058450-14058570,14058926-14059320,14059410-14059534,
            14059646-14059876,14060012-14060484,14060587-14060693,
            14060842-14061172,14061222-14061250,14061345-14061901,
            14062170-14062255,14062344-14062406,14062646-14063001,
            14063101-14063356
          Length = 1272

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/72 (26%), Positives = 32/72 (44%)
 Frame = +1

Query: 277  EKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCSADGTRIPGGIEPNQ 456
            +++L C+G  D KD S+  AC   +D N      P  C +   +    G R+   I  N+
Sbjct: 1002 QQKLSCSGDEDTKDSSNSIACEAIIDVNTV----PVTCSVSSVYEIGKGIRV---INLNE 1054

Query: 457  VPQMVTITFNGA 492
               +V +  N +
Sbjct: 1055 ADNLVDVDINSS 1066


>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
          Length = 646

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 314 LQSGLPLQNNSFSMQSPLPQPIY 246
           LQSGLPL +     +SP P+P+Y
Sbjct: 26  LQSGLPLDDRPEGARSPSPEPVY 48


>05_07_0305 -
           29097478-29097598,29097766-29097866,29098136-29098288,
           29098404-29098542,29098649-29098719,29099022-29099333,
           29099605-29099903,29100011-29100271,29100365-29100471,
           29100588-29100739,29100816-29100970,29102946-29103141,
           29103340-29103468,29103540-29103641,29103736-29103889,
           29103970-29104058
          Length = 846

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 322 SDENACTVELDPNRAPDCDPNQCVLP 399
           S EN   +++DP+    C P+ C+LP
Sbjct: 248 SRENELPLKVDPSNCKHCTPSYCLLP 273


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,320,577
Number of Sequences: 37544
Number of extensions: 348874
Number of successful extensions: 818
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)