Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20528
(686 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08) 70 2e-12
SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.) 67 1e-11
SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 1e-09
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 46 4e-05
SB_55149| Best HMM Match : Ldl_recept_a (HMM E-Value=2.6e-23) 45 5e-05
SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25) 43 2e-04
SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 3e-04
SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26) 43 3e-04
SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_47789| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-34) 42 6e-04
SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17) 41 8e-04
SB_21487| Best HMM Match : MAM (HMM E-Value=0) 41 8e-04
SB_43823| Best HMM Match : MAM (HMM E-Value=0) 41 8e-04
SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45) 41 8e-04
SB_10498| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-07) 41 0.001
SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0) 40 0.001
SB_50311| Best HMM Match : Ldl_recept_a (HMM E-Value=3.4e-20) 40 0.001
SB_18178| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_29580| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-38) 37 0.013
SB_18810| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.013
SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34) 37 0.013
SB_5319| Best HMM Match : Ldl_recept_a (HMM E-Value=7.56701e-44) 37 0.013
SB_20531| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.018
SB_45605| Best HMM Match : MAM (HMM E-Value=2.1e-16) 36 0.023
SB_6273| Best HMM Match : MAM (HMM E-Value=0) 36 0.023
SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.031
SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 36 0.031
SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.041
SB_23898| Best HMM Match : Ldl_recept_a (HMM E-Value=1.4013e-45) 35 0.054
SB_2014| Best HMM Match : MAM (HMM E-Value=0) 35 0.071
SB_31927| Best HMM Match : Ldl_recept_a (HMM E-Value=2.3e-27) 35 0.071
SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.094
SB_40871| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.16
SB_19614| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.16
SB_13199| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_28040| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.38
SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14) 32 0.38
SB_8478| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.38
SB_43556| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-11) 31 0.66
SB_22727| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.66
SB_17635| Best HMM Match : CUB (HMM E-Value=0) 29 2.7
SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0) 29 3.5
SB_43620| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_26236| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_35778| Best HMM Match : Dickkopf_N (HMM E-Value=2.4) 29 4.7
SB_33423| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-22) 28 8.1
SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32) 28 8.1
SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24) 28 8.1
>SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08)
Length = 893
Score = 69.7 bits (163), Expect = 2e-12
Identities = 29/60 (48%), Positives = 43/60 (71%)
Frame = +3
Query: 507 HDLYEQIFNGNRHNPNGCQIKGTFFVSHKYTNYAAVQELHRKGHEISVFSITHKDDPQYW 686
+ +Y++IFNG + NPNGC I+ TFFVSH+YT Y +Q L+ + HEI+ SI+H+ +W
Sbjct: 612 YPVYQKIFNGKK-NPNGCDIRATFFVSHEYTQYQLLQALYHERHEIADHSISHRLPIPWW 670
Score = 58.0 bits (134), Expect = 7e-09
Identities = 22/45 (48%), Positives = 32/45 (71%)
Frame = +1
Query: 364 APDCDPNQCVLPDCFCSADGTRIPGGIEPNQVPQMVTITFNGAVN 498
A C P+ C LP+CFCS G +PGG+ P ++PQM+ +TF+ A+N
Sbjct: 566 AERCHPDVCKLPNCFCS--GALVPGGLNPKEIPQMIMLTFDDAIN 608
>SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 530
Score = 66.9 bits (156), Expect = 1e-11
Identities = 24/47 (51%), Positives = 33/47 (70%)
Frame = +3
Query: 546 NPNGCQIKGTFFVSHKYTNYAAVQELHRKGHEISVFSITHKDDPQYW 686
NPNGC I TFF+SH YTNY ++LH +GHE++ ++TH+ YW
Sbjct: 86 NPNGCPITATFFISHNYTNYYLAEKLHSEGHELADHTVTHRTPTTYW 132
Score = 44.8 bits (101), Expect = 7e-05
Identities = 21/50 (42%), Positives = 29/50 (58%)
Frame = +1
Query: 358 NRAPDCDPNQCVLPDCFCSADGTRIPGGIEPNQVPQMVTITFNGAVNVDN 507
N A CD +C P+C CS D + PGG+ P PQ++ ITF+ + V N
Sbjct: 25 NVAEKCDLEKCQPPNCRCS-DDFQPPGGLSPALTPQIIMITFDDDITVIN 73
>SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1769
Score = 60.5 bits (140), Expect = 1e-09
Identities = 23/57 (40%), Positives = 39/57 (68%)
Frame = +3
Query: 516 YEQIFNGNRHNPNGCQIKGTFFVSHKYTNYAAVQELHRKGHEISVFSITHKDDPQYW 686
Y+ + N + NPNGC ++ TFFVSH+YT+Y + L+ + HEI+ +I+H+ ++W
Sbjct: 1585 YQTLLNDTK-NPNGCNVRATFFVSHEYTDYQLLGTLYHERHEIADHTISHRTPIEWW 1640
Score = 38.7 bits (86), Expect = 0.004
Identities = 12/27 (44%), Positives = 21/27 (77%)
Frame = +1
Query: 421 GTRIPGGIEPNQVPQMVTITFNGAVNV 501
G +P G++P Q+PQM+ +TF+ A+N+
Sbjct: 1553 GASVPNGLDPKQIPQMIMLTFDDAINM 1579
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 45.6 bits (103), Expect = 4e-05
Identities = 19/55 (34%), Positives = 24/55 (43%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCSAD 420
C +G CI +E C+ + DC D SDE C PN C C+ C D
Sbjct: 2464 CKTGTCITREWRCDHQDDCGDGSDEQQCVNYTCPNHTFKCTSGHCIANSSVCDGD 2518
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +1
Query: 172 KINCYFRATKSFTNLENGRTYLS*R*IGCGSGDCIEKELFCNGKPDCKDESDE-NACTVE 348
KI+ FR FT + R C +G CI K C+G+ DC D SDE + C+
Sbjct: 26 KISVIFRLQIVFTQVVTARLTCPPTKFLCANGMCIPKSAVCDGENDCGDMSDEPSNCSAH 85
Query: 349 L-DPNRAPDCDPNQCV 393
+ DP C +C+
Sbjct: 86 ICDPKLEFQCANGRCI 101
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCSAD 420
C +G CI + C+ + DC D SDE C P C +CV D C +
Sbjct: 2216 CNNGRCINAKWVCDRENDCGDNSDEARCPEVTCPAHEFTCPNGRCVSYDFLCDGE 2270
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENA--CTVELDPNRAPDCDPNQCVLPDCFCSAD 420
C SG CI ++ C+G DC D SDE A C V +A +C+ + C +
Sbjct: 3053 CPSGRCISRDWLCDGDNDCGDSSDEKAGECHVTCPAGQARCATGRRCIPSEWRCDGE 3109
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCSAD 420
C + C+ + C+G DC+D SDE C V C +C+ D C D
Sbjct: 3014 CDNFRCVYRSRVCDGIDDCRDGSDERNCHVTTCTADQFRCPSGRCISRDWLCDGD 3068
Score = 38.3 bits (85), Expect = 0.006
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENAC 339
C +G CI K+ C+G DC D SDE+ C
Sbjct: 95 CANGRCINKKWRCDGMKDCADGSDESTC 122
Score = 37.1 bits (82), Expect = 0.013
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +1
Query: 256 CGSG-DCIEKELFCNGKPDCKDESDENACTVELDPNRAPDC-DPNQCVLPDCFC 411
C +G CI+++ C+G+ DC D SDE C +E N C + ++C+ C
Sbjct: 1094 CANGRHCIQRKWICDGENDCGDRSDEVDCGLESCGNDRWRCSNTSRCIAKSQVC 1147
Score = 36.7 bits (81), Expect = 0.018
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENA 336
C SG C+ K C+G DC D SDE++
Sbjct: 2175 CESGQCVRKSFVCDGDNDCHDGSDESS 2201
Score = 35.9 bits (79), Expect = 0.031
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENAC 339
C SG CI C+G DC D SDE C
Sbjct: 2503 CTSGHCIANSSVCDGDTDCADGSDEKDC 2530
Score = 35.9 bits (79), Expect = 0.031
Identities = 16/46 (34%), Positives = 19/46 (41%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCV 393
C SG CI C+ DC D SDE C + CD C+
Sbjct: 3175 CASGRCISASWVCDHVNDCGDGSDEQQCINRTCADGQFSCDDGLCI 3220
Score = 35.5 bits (78), Expect = 0.041
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENAC-TVELDPNRAPDCDPNQCVLPDCFC 411
C +G C+ + C+G+ DC D SDE C P + N C+ C
Sbjct: 2255 CPNGRCVSYDFLCDGEDDCGDFSDELRCPPTTCVPGQVKCGSKNLCIPSSWLC 2307
Score = 35.5 bits (78), Expect = 0.041
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCV 393
C G CI + C+G DC D SDE P R C + CV
Sbjct: 3214 CDDGLCIARAWKCDGMMDCADASDEKGSGHRWCPQRLYQCINHVCV 3259
Score = 34.7 bits (76), Expect = 0.071
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAP---DCDPNQCVLPDCFCSAD 420
C SG+C+ C+G DC D+SDE + CD +C+ C D
Sbjct: 2335 CTSGECVPASWRCDGDNDCTDKSDEPTDCQRSNATCTGAQFACDNGRCISTRLLCDGD 2392
Score = 34.7 bits (76), Expect = 0.071
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDE 330
C +G CI L C+G DC D SDE
Sbjct: 2377 CDNGRCISTRLLCDGDNDCGDNSDE 2401
Score = 34.7 bits (76), Expect = 0.071
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +1
Query: 271 CIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFC 411
CI + C+G+ DC D SDE C + C +C+ C
Sbjct: 3141 CIPNQWKCDGESDCNDGSDEKGCPPKQCAKHQYRCASGRCISASWVC 3187
Score = 34.3 bits (75), Expect = 0.094
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENAC 339
C +G C ++ C+G DC D SDE C
Sbjct: 917 CANGQCKPRDWVCDGFDDCGDGSDEKGC 944
Score = 33.9 bits (74), Expect = 0.12
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = +1
Query: 256 CGSGD-CIEKELFCNGKPDCKDESDENA--CT 342
C +G CI E C+G+ DC+D SDEN+ CT
Sbjct: 3093 CATGRRCIPSEWRCDGESDCEDGSDENSAQCT 3124
Score = 32.3 bits (70), Expect = 0.38
Identities = 25/83 (30%), Positives = 30/83 (36%), Gaps = 2/83 (2%)
Frame = +1
Query: 250 IGCGSGD-CIEKELFCNGKPDCKDESDENACTVELDPNRAP-DCDPNQCVLPDCFCSADG 423
+ CGS + CI C+G DC D DE E N + C +CV C D
Sbjct: 2292 VKCGSKNLCIPSSWLCDGSDDCGDGWDERQDCRERPCNVSEFRCTSGECVPASWRCDGDN 2351
Query: 424 TRIPGGIEPNQVPQMVTITFNGA 492
EP Q T GA
Sbjct: 2352 DCTDKSDEPTDC-QRSNATCTGA 2373
Score = 32.3 bits (70), Expect = 0.38
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDE--NACTVELDPNRAPDCDPNQCV 393
C + C+++ C+ DC D SDE C + N CD N+C+
Sbjct: 3253 CINHVCVDRRWLCDDMDDCGDYSDELRLLCRYSICRNSHFRCDNNKCI 3300
Score = 31.9 bits (69), Expect = 0.50
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDEN 333
C +G CI C+G+ DC D SDE+
Sbjct: 832 CKNGHCISLRWKCDGENDCVDNSDED 857
Score = 31.5 bits (68), Expect = 0.66
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDE-NACTVEL-DPNRAPDCDPNQCV 393
C + CI + C+G+ DC D SDE ++C V + P D +C+
Sbjct: 2933 CDNYRCISRLWRCDGEDDCGDGSDEPDSCPVRVCKPGTYQCADNRKCI 2980
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +1
Query: 262 SGDCIEKELFCNGKPDCKDESDENACT 342
S CI C+ DC D SDE CT
Sbjct: 1057 SSRCIPLRFVCDADDDCGDRSDERNCT 1083
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/59 (30%), Positives = 26/59 (44%)
Frame = +1
Query: 271 CIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCSADGTRIPGGIE 447
CI K C+G+ DC D SDE P C +QC + C+ +P G++
Sbjct: 1140 CIAKSQVCDGRVDCPDASDE-----------GPGCGLDQCHSNNGGCAQLCMDVPEGVQ 1187
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 259 GSGDCIEKELFCNGKPDCKDESDENACTVELD 354
G+ CI C+G DC D DE + ++LD
Sbjct: 136 GTSRCIPLSRVCDGTNDCGDNYDEGSHCLDLD 167
>SB_55149| Best HMM Match : Ldl_recept_a (HMM E-Value=2.6e-23)
Length = 190
Score = 45.2 bits (102), Expect = 5e-05
Identities = 22/61 (36%), Positives = 30/61 (49%)
Frame = +1
Query: 265 GDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCSADGTRIPGGI 444
G CI K C+G+ DC D SDE C ++ +C+ NQCV C + PGG
Sbjct: 101 GKCIPKSWRCDGEMDCPDSSDEEGCVNRTCSSKEFNCN-NQCVPLSWKCDGEKDCRPGGF 159
Query: 445 E 447
+
Sbjct: 160 D 160
>SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)
Length = 147
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/64 (34%), Positives = 30/64 (46%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCSADGTRIP 435
C +G C+ +EL C+G C D SDE C + PD +CV P FC+ +
Sbjct: 45 CLNGMCVGQELRCDGDYACVDHSDERNCACRSAEFKCPD---GKCVHPSKFCNGESDCTD 101
Query: 436 GGIE 447
G E
Sbjct: 102 GSDE 105
Score = 42.7 bits (96), Expect = 3e-04
Identities = 22/65 (33%), Positives = 26/65 (40%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCSADGTRIP 435
C G C+ FCNG+ DC D SDE +C A C CV C+
Sbjct: 81 CPDGKCVHPSKFCNGESDCTDGSDEWSCDNSCSSRHA--CADGTCVTWSLTCNGVSDCQD 138
Query: 436 GGIEP 450
G EP
Sbjct: 139 GSDEP 143
>SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1112
Score = 42.7 bits (96), Expect = 3e-04
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENACTVELDPNR 363
C +G CI+ C+G DC+D SDE C + L P R
Sbjct: 137 CNNGQCIKASWLCDGASDCQDNSDEMNCPLTLAPGR 172
Score = 42.3 bits (95), Expect = 4e-04
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAP-DCDPNQCVLPDCFCSADGTRI 432
C +G C+ KE C+G DC D SDE+ C P R P C P+ + C + R
Sbjct: 308 CRNGRCVLKEWLCDGMDDCGDSSDEDNC-----PTRPPYTCPPSDFTCANSQCVPNSFRC 362
Query: 433 PG 438
G
Sbjct: 363 DG 364
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENAC--TVELDPNRAPDCDPNQCVLPDCFCSAD 420
C + C+ C+G+ DC D SDE+ C T N CD +C+ C +
Sbjct: 350 CANSQCVPNSFRCDGENDCGDRSDESGCKPTTTCSANEF-RCDDGRCITSTFRCDRE 405
Score = 33.1 bits (72), Expect = 0.22
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +1
Query: 256 CGSGD-CIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCV-LPDCFCSADGT 426
C G+ C+ + C+G+ DC D SDE C + C +C+ LP DGT
Sbjct: 477 CADGNGCVHRRWICDGERDCLDGSDEAGCGTIGCSSDEFTCTNQKCIPLPQ---KCDGT 532
Score = 31.9 bits (69), Expect = 0.50
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENAC 339
C G CI C+ + DC D SDE C
Sbjct: 390 CDDGRCITSTFRCDREFDCTDRSDERGC 417
Score = 31.9 bits (69), Expect = 0.50
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = +1
Query: 262 SGDCIEKELFCNGKPDCKDESDENACTVELDPNRAP-DCDPNQCVLPD 402
SG CI C+ + DC D SDE C P P C N+ + D
Sbjct: 432 SGRCIPGRFRCDHRSDCLDGSDEQNCQNVTRPTPPPVKCRKNERMCAD 479
Score = 28.7 bits (61), Expect = 4.7
Identities = 21/65 (32%), Positives = 27/65 (41%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCSADGTRIP 435
C + CI C+G +C D SDE C P+ P P+ P S D T P
Sbjct: 517 CTNQKCIPLPQKCDGTDNCGDGSDEKMCPT---PSVPP--QPDIAYQP---VSGDNTTQP 568
Query: 436 GGIEP 450
G + P
Sbjct: 569 GQVCP 573
>SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)
Length = 351
Score = 42.7 bits (96), Expect = 3e-04
Identities = 22/65 (33%), Positives = 26/65 (40%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCSADGTRIP 435
C G C+ FCNG+ DC D SDE +C A C CV C+
Sbjct: 81 CPDGKCVHPSKFCNGESDCTDGSDEWSCDNSCSSRHA--CADGTCVTWSLTCNGVSDCQD 138
Query: 436 GGIEP 450
G EP
Sbjct: 139 GSDEP 143
Score = 41.9 bits (94), Expect = 5e-04
Identities = 21/64 (32%), Positives = 30/64 (46%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCSADGTRIP 435
C +G C+ +E+ C+G C D SDE C + PD +CV P FC+ +
Sbjct: 45 CLNGMCVGQEVRCDGDYACVDHSDERNCACRSAEFKCPD---GKCVHPSKFCNGESDCTD 101
Query: 436 GGIE 447
G E
Sbjct: 102 GSDE 105
Score = 38.3 bits (85), Expect = 0.006
Identities = 18/46 (39%), Positives = 22/46 (47%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCV 393
C G C+ L CNG DC+D SDE + D R P P C+
Sbjct: 118 CADGTCVTWSLTCNGVSDCQDGSDEPKLCGKHDTMRPPPW-PRPCI 162
>SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1717
Score = 41.9 bits (94), Expect = 5e-04
Identities = 16/28 (57%), Positives = 18/28 (64%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENAC 339
C SG+CIE FC+GK DC D DE C
Sbjct: 703 CSSGECIEVATFCDGKKDCGDGFDETHC 730
Score = 41.5 bits (93), Expect = 6e-04
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPD-CKDESDENACTVELDPNRAPDCDPNQCVLPDCFC 411
C +G+C+ K CNG D C D SDE+ CT L + C +C+ FC
Sbjct: 666 CNNGECVTKTSRCNGMRDSCVDGSDESGCTCGLHEFQ---CSSGECIEVATFC 715
>SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1315
Score = 41.9 bits (94), Expect = 5e-04
Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCSA-----D 420
C SG+CI+ C+G DCKD SDE+ C + + C CV C D
Sbjct: 1162 CESGECIDVVGLCDGTDDCKDASDESRCDHKCSKDEY-QCVSGACVKWPLTCDGKKDCED 1220
Query: 421 GTRIPG 438
GT PG
Sbjct: 1221 GTDEPG 1226
Score = 35.9 bits (79), Expect = 0.031
Identities = 20/57 (35%), Positives = 28/57 (49%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCSADGT 426
C +G C+ ++L C+G C D SDE C L A C+ +C+ D DGT
Sbjct: 1126 CVNGQCVSRDLICDGDNACLDFSDEANCKC-LSSKFA--CESGECI--DVVGLCDGT 1177
>SB_47789| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-34)
Length = 262
Score = 41.5 bits (93), Expect = 6e-04
Identities = 19/55 (34%), Positives = 23/55 (41%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCSAD 420
CG+G CI C+ DC D SDEN C CD +C+ C D
Sbjct: 195 CGNGKCIPSSWKCDHDNDCGDNSDENNCPYSTCNPSQFKCDNGRCISSKWRCDHD 249
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENAC 339
C +G CI + C+ DC D SDE C
Sbjct: 234 CDNGRCISSKWRCDHDNDCGDMSDERNC 261
>SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17)
Length = 1571
Score = 41.1 bits (92), Expect = 8e-04
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +1
Query: 256 CG-SGDCIEKELFCNGKPDCKDESDENACTV-ELDPNRAPDCDPNQCVLPD 402
CG G+C+ + L CNG+ DC+D SDE C + + AP + VL D
Sbjct: 733 CGVPGECVPQTLRCNGQMDCRDASDEQDCGIPTVTTTSAPQPTKGKTVLGD 783
>SB_21487| Best HMM Match : MAM (HMM E-Value=0)
Length = 874
Score = 41.1 bits (92), Expect = 8e-04
Identities = 18/36 (50%), Positives = 22/36 (61%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENACTVELDPNR 363
C SG+CI +L C+ DC D SDE C V+ DP R
Sbjct: 711 CRSGECISLDLLCDFNKDCLDGSDEENCGVQ-DPGR 745
>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
Length = 1724
Score = 41.1 bits (92), Expect = 8e-04
Identities = 18/38 (47%), Positives = 21/38 (55%)
Frame = +1
Query: 262 SGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDC 375
S C+ + L C+GKPDC D SDE C V NR C
Sbjct: 1353 SQKCLNRTLQCDGKPDCSDYSDEAHCRVRKSINRNVVC 1390
Score = 36.3 bits (80), Expect = 0.023
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = +1
Query: 271 CIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLP 399
CI+ C+G PDC D SDE+ C PN DC+ Q P
Sbjct: 1316 CIKSSFVCDGVPDCNDHSDEDDC-----PN--SDCNLEQIYCP 1351
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Frame = +1
Query: 256 CGSGD-CIEKELFCNGKPDCKDESDENACTVE---LDPNRAPDCDPNQCVLPDCFC 411
C D CI C+G+ DC D DE C + P+ P P C C
Sbjct: 345 CSKDDRCINIFWKCDGESDCTDGEDEQGCATTAPVITPSLGPP-HPGDCNFEKDMC 399
>SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45)
Length = 622
Score = 41.1 bits (92), Expect = 8e-04
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +1
Query: 253 GCGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCS 414
GC +G C+++ L C+G C D SDE C+ P+ C +C+ C+
Sbjct: 189 GCENGQCVKRGLLCDGDKACLDGSDEKHCSC---PSNMFLCPSGECIPTTALCN 239
Score = 37.1 bits (82), Expect = 0.013
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENAC 339
C SG+CI CN + DC D +DE C
Sbjct: 226 CPSGECIPTTALCNNENDCSDNADERNC 253
>SB_10498| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-07)
Length = 106
Score = 40.7 bits (91), Expect = 0.001
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENAC 339
C G CI++ CNGK DC D SDE C
Sbjct: 11 CRDGTCIDRNEHCNGKIDCPDASDEKGC 38
>SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1288
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +1
Query: 211 NLENGRTYLS*R*IGCGSGDCIEKELFCNGKPDCKDESDENAC 339
N N Y C +G+CI K C+G+ DC ++SDEN C
Sbjct: 739 NCPNSSQYCKSSEYQCSTGECIHKSWVCDGEFDCLNKSDENNC 781
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = +1
Query: 250 IGCGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCSAD 420
I CG+G C+ K C+ DC D +DE C C +C+L C D
Sbjct: 672 ITCGNGICVVKRWVCDQDDDCGDGTDELNCAPHTCRPNEFTCADKRCILSRWRCDGD 728
Score = 37.5 bits (83), Expect = 0.010
Identities = 22/70 (31%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDE-NACTVELDPNRAPDCDPNQCVLPDCFCSADGTRI 432
C +G CI + C+ DC D SDE N+C C CV+ C D
Sbjct: 634 CTNGRCIPRRWVCDKDDDCHDGSDERNSCATMTCSENEITCGNGICVVKRWVCDQDDDCG 693
Query: 433 PGGIEPNQVP 462
G E N P
Sbjct: 694 DGTDELNCAP 703
Score = 33.9 bits (74), Expect = 0.12
Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
Frame = +1
Query: 271 CIEKELFCNGKPDCKDESDENAC-TVELDPNRAPDCDPNQCVLPDCFCSADGTRIPGGIE 447
CI C+G+ DC D SDE C +P+ C +C+ C D G E
Sbjct: 599 CIAATWKCDGEDDCGDNSDEINCPKATCNPDTQFRCTNGRCIPRRWVCDKDDDCHDGSDE 658
Query: 448 PNQVPQM 468
N M
Sbjct: 659 RNSCATM 665
Score = 31.1 bits (67), Expect = 0.87
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPN--QCVLPDC 405
C CI C+G DC D SDE C PN + C + QC +C
Sbjct: 713 CADKRCILSRWRCDGDRDCADNSDEINC-----PNSSQYCKSSEYQCSTGEC 759
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Frame = +1
Query: 256 CGSG-DCIEKELFCNGKPDCKDESDE--NACTVELDPNRAP 369
CGS CI + C+G DC + +DE N E N P
Sbjct: 796 CGSSKQCIPESKVCDGSVDCTNSADEPDNCFINECKDNNGP 836
>SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 921
Score = 40.3 bits (90), Expect = 0.001
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENACTVELDP 357
C +G C +K +C+G+ DC D SDE C+ +P
Sbjct: 231 CDNGRCEDKRWWCDGQDDCNDGSDEKNCSASANP 264
>SB_50311| Best HMM Match : Ldl_recept_a (HMM E-Value=3.4e-20)
Length = 772
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFC 411
C +G CI K L+C+G C D SDE C P+ C +C++ C
Sbjct: 98 CDNGKCIRKNLYCDGDFACVDGSDETRCEC---PSNMFLCPSGECIMGTQLC 146
Score = 37.9 bits (84), Expect = 0.008
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENAC 339
C SG+CI C+GK DC D +DE C
Sbjct: 134 CPSGECIMGTQLCDGKKDCTDNTDEKNC 161
>SB_18178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 489
Score = 40.3 bits (90), Expect = 0.001
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +1
Query: 271 CIEKELFCNGKPDCKDESDENACTVELDPNR 363
CI+ C+GKP+C D SDEN C ++P+R
Sbjct: 285 CIDISYKCDGKPECADHSDENDCPPLINPDR 315
Score = 36.3 bits (80), Expect = 0.023
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDEN 333
C SG CI + C+GK DC D SDE+
Sbjct: 366 CRSGVCIPPQWICDGKDDCGDRSDES 391
>SB_29580| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-38)
Length = 130
Score = 37.1 bits (82), Expect = 0.013
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPN-QCVLPDCFCSADGTRI 432
C +G CI + C+ + DC D SDE C+ ++ + C + +C+ C
Sbjct: 11 CNNGRCITRAFRCDDEDDCLDNSDEQGCSRKVCRDDQFQCGTSRKCIRKSKICDGKSDCS 70
Query: 433 PGGIEPNQV-PQ 465
G E N V PQ
Sbjct: 71 GGEDEKNCVKPQ 82
Score = 35.9 bits (79), Expect = 0.031
Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Frame = +1
Query: 256 CG-SGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDP 381
CG S CI K C+GK DC DE C P P P
Sbjct: 50 CGTSRKCIRKSKICDGKSDCSGGEDEKNCVKPQTPPPTPPLKP 92
Score = 33.1 bits (72), Expect = 0.22
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 259 GSGDCIEKELFCNGKPDCKDESDENAC 339
GSG C+++ C+G DC D SDE C
Sbjct: 104 GSG-CVDRMKICDGMRDCADGSDERGC 129
>SB_18810| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 37.1 bits (82), Expect = 0.013
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +1
Query: 262 SGDCIEKELFCNGKPDCKDESDENACTVE 348
S C+ + L C+GKPDC D SDE C E
Sbjct: 56 SQKCLNRTLQCDGKPDCSDYSDEAHCRGE 84
Score = 36.3 bits (80), Expect = 0.023
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = +1
Query: 271 CIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLP 399
CI+ C+G PDC D SDE+ C PN DC+ Q P
Sbjct: 19 CIKSSFVCDGVPDCNDHSDEDDC-----PN--SDCNLEQIYCP 54
>SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)
Length = 1120
Score = 37.1 bits (82), Expect = 0.013
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENACT 342
C S +CI L C+G DC D SDE CT
Sbjct: 30 CTSSECIPDVLKCDGSEDCADSSDEINCT 58
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 265 GDCIEKELFCNGKPDCKDESDENAC 339
GDCI C+G DC+ +DE C
Sbjct: 74 GDCIPLSKHCDGTWDCQHGTDEMDC 98
>SB_5319| Best HMM Match : Ldl_recept_a (HMM E-Value=7.56701e-44)
Length = 212
Score = 37.1 bits (82), Expect = 0.013
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +1
Query: 256 CGSG-DCIEKELFCNGKPDCKDESDENACTVELDPNRAPDC-DPNQCVLPDCFC 411
C +G CI+++ C+G+ DC D SDE C +E N C + ++C+ C
Sbjct: 121 CANGRHCIQRKWICDGENDCGDRSDEVDCGLESCGNDRWRCSNTSRCIAKSQVC 174
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +1
Query: 262 SGDCIEKELFCNGKPDCKDESDENACT 342
S CI C+ DC D SDE CT
Sbjct: 84 SSRCIPLRFVCDADDDCGDRSDERNCT 110
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 271 CIEKELFCNGKPDCKDESDE 330
CI K C+G+ DC D SDE
Sbjct: 167 CIAKSQVCDGRVDCPDASDE 186
>SB_20531| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 36.7 bits (81), Expect = 0.018
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDE 330
C SGDC+ C+G DC D SDE
Sbjct: 223 CASGDCVPLTSVCDGSADCSDSSDE 247
>SB_45605| Best HMM Match : MAM (HMM E-Value=2.1e-16)
Length = 187
Score = 36.3 bits (80), Expect = 0.023
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENAC 339
C + C++++ CN K DC D SDE C
Sbjct: 152 CANSKCVDRDQLCNFKDDCGDNSDELPC 179
>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
Length = 4272
Score = 36.3 bits (80), Expect = 0.023
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 250 IGCGSGDCIEKELFCNGKPDCKDESDENACTV 345
+ C +G CI+K C+ DC D SDE C +
Sbjct: 3209 VKCTNGGCIQKSKLCDFTDDCGDNSDEGRCAL 3240
Score = 34.3 bits (75), Expect = 0.094
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENAC 339
C G CI+ C+ DC D SDEN C
Sbjct: 2100 CARGSCIDTGRVCDFTDDCGDNSDENNC 2127
Score = 33.9 bits (74), Expect = 0.12
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENAC 339
C +G CI C+ K DC D SDE C
Sbjct: 2557 CSNGQCINAIQVCDFKKDCSDGSDEATC 2584
Score = 31.9 bits (69), Expect = 0.50
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENACT 342
C G C + C+ DC D SDE +C+
Sbjct: 3627 CTRGSCTSSDNVCDFSDDCGDSSDERSCS 3655
Score = 31.5 bits (68), Expect = 0.66
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENAC 339
C G CI + L C+ + DC D DE +C
Sbjct: 2253 CTDGSCIMQSLRCDYQNDCSDGLDEASC 2280
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDC--KDESDENAC 339
C G CI K C+ + DC D SDE+ C
Sbjct: 4066 CSRGGCIPKSYLCDYQADCMFNDLSDESKC 4095
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENACT 342
C SG CI C+ + DC D S+E T
Sbjct: 2790 CDSGHCISSSSKCDFETDCCDGSEERNST 2818
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +1
Query: 253 GCGS-GDCIEKELFCNGKPDCKDESDENAC 339
GC + G CI C+ DC D SDE +C
Sbjct: 3431 GCVTDGKCIPLTSVCDFNVDCLDGSDERSC 3460
>SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 35.9 bits (79), Expect = 0.031
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENAC 339
C +G CI L C+ DC DESDE C
Sbjct: 12 CANGRCISGALVCDLDDDCGDESDERGC 39
>SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 628
Score = 35.9 bits (79), Expect = 0.031
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENACTVELDP 357
C +G C+ L C+G DC D SDE +C P
Sbjct: 110 CLNGRCVFYRLVCDGVDDCGDSSDEMSCNATATP 143
Score = 35.1 bits (77), Expect = 0.054
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDE-NACTVELDPNRAPDCDPNQCVLPDCFCSADGTRI 432
C +G CI C+G DC D SDE +C+ + C +C+ C D
Sbjct: 17 CNNGRCIPMSWRCDGDNDCGDMSDEPPSCSGRSCNSGQFSCSNGRCISRSWVCDRDNDCG 76
Query: 433 PGGIEPN 453
G E N
Sbjct: 77 DGSDERN 83
Score = 33.5 bits (73), Expect = 0.16
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAP 369
C + C+ C+G+ DC D SDE C+ P P
Sbjct: 156 CANRRCVYNSQRCDGQNDCGDWSDETGCSTPPIPTTCP 193
Score = 32.7 bits (71), Expect = 0.29
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENACT 342
C +G CI + C+ DC D SDE C+
Sbjct: 57 CSNGRCISRSWVCDRDNDCGDGSDERNCS 85
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +1
Query: 262 SGDCIEKELFCNGKPDCKDESDE 330
SG CI CNG+ DC D DE
Sbjct: 204 SGLCISTSWLCNGRVDCPDAWDE 226
>SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 626
Score = 35.5 bits (78), Expect = 0.041
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 211 NLENGRTYLS*R*IGCGSGDCIEKELFCNGKPDCKDESDE 330
N N Y C +G+CI K C+G+ DC ++SDE
Sbjct: 584 NCPNSSQYCKSSEYQCSTGECIHKSWVCDGEFDCLNKSDE 623
Score = 31.1 bits (67), Expect = 0.87
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPN--QCVLPDC 405
C CI C+G DC D SDE C PN + C + QC +C
Sbjct: 558 CADKRCILSRWRCDGDRDCADNSDEINC-----PNSSQYCKSSEYQCSTGEC 604
>SB_23898| Best HMM Match : Ldl_recept_a (HMM E-Value=1.4013e-45)
Length = 291
Score = 35.1 bits (77), Expect = 0.054
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENAC 339
C +G C+ + C+G DC+D +DE C
Sbjct: 104 CNNGHCVHRNWKCDGSNDCRDGTDEVGC 131
Score = 34.7 bits (76), Expect = 0.071
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENACT 342
C +G+CI + C+ DC D SDE AC+
Sbjct: 141 CRNGNCINRNYVCDKDNDCGDGSDEVACS 169
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENAC 339
C + CI C+ DC D SDE+ C
Sbjct: 183 CDNDRCIPLNWVCDRLNDCHDNSDESGC 210
>SB_2014| Best HMM Match : MAM (HMM E-Value=0)
Length = 2282
Score = 34.7 bits (76), Expect = 0.071
Identities = 21/58 (36%), Positives = 26/58 (44%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCSADGTR 429
C SG CI C+G +C D SDE+ C + N C +CV C DG R
Sbjct: 216 CTSGHCISGSSRCDGDYNCMDRSDEDGC--KCFTNEL-TCSSGRCVQSINLC--DGVR 268
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENAC 339
C SG C++ C+G DC+ DE C
Sbjct: 252 CSSGRCVQSINLCDGVRDCEYGLDELRC 279
>SB_31927| Best HMM Match : Ldl_recept_a (HMM E-Value=2.3e-27)
Length = 157
Score = 34.7 bits (76), Expect = 0.071
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENACT 342
C +G+CI + C+ DC D SDE AC+
Sbjct: 7 CRNGNCINRNYVCDKDNDCGDGSDEVACS 35
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENAC 339
C + CI C+ DC D SDE+ C
Sbjct: 49 CDNDRCIPLNWVCDRLNDCHDNSDESGC 76
>SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1712
Score = 34.3 bits (75), Expect = 0.094
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +1
Query: 250 IGCGS--GDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFC 411
I C S CI K C+G DC D+SDE C N+ CD QC+ D C
Sbjct: 1312 ISCASMKAICIPKMWRCDGMLDCTDKSDEEDCP-PCKENQF-RCDNGQCIDGDPRC 1365
Score = 32.3 bits (70), Expect = 0.38
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCV 393
C +G CI+ + C+ +C D SDE C +PN C+ +C+
Sbjct: 1353 CDNGQCIDGDPRCDKYKNCTDGSDELGCAT-CEPNFF-RCNTGKCI 1396
Score = 31.1 bits (67), Expect = 0.87
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENAC 339
C +G CI C+ DC D SDE C
Sbjct: 1390 CNTGKCISARWQCDQLDDCGDNSDEIGC 1417
>SB_40871| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 33.5 bits (73), Expect = 0.16
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENAC 339
C +G I + C+G+ DC+D SDE C
Sbjct: 88 CSNGHLIYRHWRCDGENDCRDGSDETGC 115
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENAC 339
C +G C+ + C+ DC D SDE C
Sbjct: 125 CRNGRCVSRSWVCDKDNDCGDGSDEVQC 152
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENAC 339
C + CI + C+ DC D SDE C
Sbjct: 167 CDNDRCIPRNWVCDRDNDCGDGSDETGC 194
>SB_19614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 33.5 bits (73), Expect = 0.16
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENACTVE 348
C + CI+ CN + DC+D SDE +C E
Sbjct: 399 CQNRQCIDDFKQCNNRQDCRDGSDEISCPPE 429
>SB_13199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 33.1 bits (72), Expect = 0.22
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDEN 333
CG+ CI + C+G DC D SDE+
Sbjct: 72 CGNSTCIPLTVLCDGLYDCADRSDES 97
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENAC 339
C + C+ + C+G DC D SDE C
Sbjct: 28 CENKLCVPRTWLCDGDNDCHDGSDEKNC 55
>SB_28040| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 32.3 bits (70), Expect = 0.38
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENAC 339
C SG CI C+ +C D SDE+ C
Sbjct: 238 CASGHCISGSSRCDSDYNCMDRSDEDGC 265
Score = 31.1 bits (67), Expect = 0.87
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENAC 339
C SG C+ C+G DC+ + DE C
Sbjct: 274 CSSGRCVPSINLCDGVKDCEQDLDELRC 301
>SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14)
Length = 1217
Score = 32.3 bits (70), Expect = 0.38
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENAC 339
C SG CI C+ +C D SDE+ C
Sbjct: 1111 CASGHCISGSSRCDSDYNCMDRSDEDGC 1138
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENAC 339
C SG C+ C+G DC+ DE C
Sbjct: 1147 CSSGRCVPSINLCDGVKDCEHGLDELRC 1174
>SB_8478| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 32.3 bits (70), Expect = 0.38
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENAC 339
C SG CI C+ +C D SDE+ C
Sbjct: 201 CASGHCISGSSRCDSDYNCMDRSDEDGC 228
Score = 31.5 bits (68), Expect = 0.66
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDC 375
C SG C+ C+G DC+ DE C + P + +C
Sbjct: 237 CSSGRCVPSINLCDGVKDCEHGLDELRCGSSVCPLNSLNC 276
>SB_43556| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-11)
Length = 65
Score = 31.5 bits (68), Expect = 0.66
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENACT 342
C +G CI C+ + DC D SDE C+
Sbjct: 14 CDNGRCISATWVCDTENDCGDNSDEMNCS 42
>SB_22727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 31.5 bits (68), Expect = 0.66
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENAC 339
C SG CI C+ +C D SDE+ C
Sbjct: 282 CTSGHCISGSSRCDSDYNCMDSSDEDGC 309
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENAC 339
C SG C+ C+G DC+ DE C
Sbjct: 318 CSSGRCVPSINLCDGVKDCEQGLDELRC 345
>SB_17635| Best HMM Match : CUB (HMM E-Value=0)
Length = 630
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDENAC 339
C + + I+ + C+G DC D SDE+ C
Sbjct: 424 CDNDNYIQCQWKCDGTDDCGDHSDEDNC 451
>SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 2681
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDE-NACTVELDPNRAPDC 375
CG+G E+ C G +C +++ C V+ P PDC
Sbjct: 2010 CGAGGKRERSRTCQGGSNCPGSANQVEMCDVQRCPLICPDC 2050
>SB_43620| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1680
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 256 CGSGDCIEKELFCNGKPDCKDESDE-NACTVELDPNRAPDC 375
CG+G E+ C G +C +++ C V+ P PDC
Sbjct: 16 CGAGGKRERSRTCQGGSNCPGSANQVEMCDVQRCPLICPDC 56
>SB_26236| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 736
Score = 29.1 bits (62), Expect = 3.5
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +1
Query: 316 DESDENACTVELDPNRAPDCDPNQCV 393
D+ D+ C +P++ PD D ++CV
Sbjct: 410 DQGDQGECVTVPEPDQVPDSDRDECV 435
>SB_35778| Best HMM Match : Dickkopf_N (HMM E-Value=2.4)
Length = 178
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/57 (29%), Positives = 23/57 (40%)
Frame = +1
Query: 250 IGCGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCSAD 420
I CGS + + C DC E D C E D DC ++ D C++D
Sbjct: 2 IRCGSDEDCASDEDCASDEDCASEED---CASEEDCGSDDDCASDEDCASDEDCASD 55
>SB_33423| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-22)
Length = 133
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 271 CIEKELFCNGKPDCKDESDENACTV 345
C+ K C+ DC D SDE C +
Sbjct: 101 CLAKSSLCDTVHDCDDGSDEKNCPI 125
>SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)
Length = 1039
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 271 CIEKELFCNGKPDCKDESDENACTV 345
C+ K C+ DC D SDE C +
Sbjct: 914 CLAKSSLCDTVHDCDDGSDEKNCPI 938
>SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24)
Length = 652
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 262 SGDCIEKELFCNGKPDCKDESDE 330
+G CI + C+G DC+D DE
Sbjct: 221 TGRCIPESKVCDGTRDCQDGEDE 243
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,910,064
Number of Sequences: 59808
Number of extensions: 441383
Number of successful extensions: 1299
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1283
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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