Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20527
         (687 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    40   0.043
UniRef50_Q8ESW2 Cluster: Acetoacetyl-CoA synthetase; n=1; Oceano...    33   6.5  
UniRef50_A5ABF3 Cluster: Contig An11c0010, complete genome; n=1;...    33   8.6  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 40.3 bits (90), Expect = 0.043
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = -1

Query: 666 AGWWYLPVRTHKRSYHQ 616
           A WWYLP RTHKRSYH+
Sbjct: 569 AEWWYLPARTHKRSYHR 585


>UniRef50_Q8ESW2 Cluster: Acetoacetyl-CoA synthetase; n=1;
           Oceanobacillus iheyensis|Rep: Acetoacetyl-CoA synthetase
           - Oceanobacillus iheyensis
          Length = 661

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 558 EGITWCNKNQTRKIIICVITGGRTSCESARVGTTTLPISA 677
           EG  WC  +  + I +  ++GG   C +  +G+ TLP+ A
Sbjct: 402 EGFQWCYTHVKKDIWVSSVSGGTDVCTAFLLGSPTLPVYA 441


>UniRef50_A5ABF3 Cluster: Contig An11c0010, complete genome; n=1;
           Aspergillus niger|Rep: Contig An11c0010, complete genome
           - Aspergillus niger
          Length = 412

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 20/64 (31%), Positives = 32/64 (50%)
 Frame = +2

Query: 17  VAIIQHKIIDRCLNLAYDIYKIKRIYTSSEQQPSDRRSTEQISPARWKIFPLSSSLPKIN 196
           +AI +H++ DRC+ L   +   +R+  + +  PS     E  S  + + F   SSLP  N
Sbjct: 177 LAIYEHRLTDRCVALCLTVSCRRRLSGACDHAPSYPPLREDFSVPQRRAF---SSLPSFN 233

Query: 197 SLKA 208
             KA
Sbjct: 234 VAKA 237


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 651,482,750
Number of Sequences: 1657284
Number of extensions: 12372593
Number of successful extensions: 26490
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26488
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)