Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20527
         (687 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    23   2.3  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    22   4.1  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   4.1  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    21   9.5  

>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
          beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 98 LYICALSCKCRKRDSGICQLSC 33
          LY+ A+    RK DSGI    C
Sbjct: 13 LYLTAIYVSSRKSDSGIWYWQC 34


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = -2

Query: 620 TSNYANYNFAGLIFITPCYSFTVKVN 543
           T N  N NF    F  P YS    +N
Sbjct: 352 TQNSTNINFVSTFFKIPFYSTLRPIN 377


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/27 (29%), Positives = 11/27 (40%)
 Frame = +3

Query: 555 GEGITWCNKNQTRKIIICVITGGRTSC 635
           GE + WC+ N       CV    +  C
Sbjct: 97  GEYVDWCSTNPCENQATCVQNKNQYQC 123


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 628 PLVSPHG*VPPP 663
           P V PH  VPPP
Sbjct: 12  PTVLPHQEVPPP 23


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,536
Number of Sequences: 336
Number of extensions: 3472
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)