Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20527
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c...    31   0.21 
SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom...    26   4.4  
SPBC215.11c |||aldo/keto reductase, unknown biological role|Schi...    26   5.9  

>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 144 DICSVDRRSEGCCSELVYMRFIL*MS*ARFRHLSI 40
           D+C+V R   GCC+   +++  L      F HL I
Sbjct: 448 DLCNVSRAGGGCCTAAAFIKCFLAQKDLSFAHLDI 482


>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 266

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -2

Query: 596 FAGLIFITPCYSFTVKVNREHLLSTYFIRKLV 501
           F G+ ++ P +SF V+++   L+  +FI  +V
Sbjct: 76  FGGIFYLHPAFSFWVQMHPWFLILNFFISLVV 107


>SPBC215.11c |||aldo/keto reductase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 306

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 237 LHQNVKMHQCALSELIFGRLDDKGK 163
           L +NVK     LS  +F +LD++GK
Sbjct: 267 LEENVKAAGIQLSSEVFAKLDEEGK 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,736,767
Number of Sequences: 5004
Number of extensions: 54003
Number of successful extensions: 118
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)