Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20527
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0649 - 16566815-16567392,16567491-16567623,16568000-165687...    29   4.6  
11_06_0708 + 26475306-26478404                                         28   6.0  
11_06_0699 + 26394482-26396336,26396807-26397480,26397873-26398166     28   6.0  
01_03_0264 - 14419381-14419431,14419807-14419875,14420771-144208...    28   8.0  

>05_03_0649 -
           16566815-16567392,16567491-16567623,16568000-16568765,
           16569242-16569260,16569320-16569367,16569401-16569506
          Length = 549

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +2

Query: 38  IIDRCLNLAYDIYKIKRIYTSSEQQPSDRRSTEQISPARWKIFPLSSSLP 187
           + D C+  A  +   K+  +SS+QQ   +RS +  S A W   P +SS P
Sbjct: 48  LADLCVRPAARLIHAKKSSSSSQQQQQQQRSRQAGSKAGW---PSTSSTP 94


>11_06_0708 + 26475306-26478404
          Length = 1032

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 369 LKHSVELYYVLFILRNIYLPIDTSLKRDCC 280
           L+ + E YY   I RN+  P+DTS  +  C
Sbjct: 458 LEDTAEEYYYELISRNLLQPVDTSFDQSKC 487


>11_06_0699 + 26394482-26396336,26396807-26397480,26397873-26398166
          Length = 940

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 369 LKHSVELYYVLFILRNIYLPIDTSLKRDCC 280
           L+ + E YY   I RN+  P+DTS  +  C
Sbjct: 458 LEDTAEEYYYELISRNLLQPVDTSFDQSKC 487


>01_03_0264 -
           14419381-14419431,14419807-14419875,14420771-14420817,
           14421340-14422474
          Length = 433

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -1

Query: 486 SNTVASLDTNAPDVLSFRPRRLEINIYIDL 397
           ++ VASLD NA DV  + PR  EI +  DL
Sbjct: 113 ASAVASLDMNAADVAGYLPR--EIGLLSDL 140


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,461,493
Number of Sequences: 37544
Number of extensions: 336244
Number of successful extensions: 681
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)