Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20527
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g26290.1 68418.m03143 meprin and TRAF homology domain-contain...    32   0.31 
At5g26260.1 68418.m03133 meprin and TRAF homology domain-contain...    31   0.54 
At5g26300.1 68418.m03144 meprin and TRAF homology domain-contain...    31   0.95 
At5g13620.1 68418.m01578 expressed protein ; expression supporte...    29   2.9  
At2g04170.1 68415.m00402 meprin and TRAF homology domain-contain...    29   2.9  
At2g04190.1 68415.m00404 meprin and TRAF homology domain-contain...    29   3.8  
At2g29050.1 68415.m03531 rhomboid family protein contains PFAM d...    28   5.0  
At2g38320.1 68415.m04708 expressed protein                             28   6.7  
At1g63120.1 68414.m07133 rhomboid family protein contains PFAM d...    28   6.7  
At5g26320.1 68418.m03146 meprin and TRAF homology domain-contain...    27   8.8  

>At5g26290.1 68418.m03143 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein low similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 333

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 106 TTTFGPSVYRANITRSVEDLPFVVKPPKNQFTQSALMHFNIL 231
           T TFG  +Y     +  E + F+  PP N FT   ++HF+ L
Sbjct: 174 TGTFGAEIYIVKPAQQKEKVTFISNPPDNVFTWK-ILHFSTL 214


>At5g26260.1 68418.m03133 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 351

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +1

Query: 106 TTTFGPSVYRANITRSVEDLPFVVKPPKNQFTQSALMHFNILMQLF 243
           T +FG  ++  N T   E + F+  PP N FT   ++ F+ L   F
Sbjct: 185 TASFGAEIFIVNPTEKQEKVTFISNPPDNVFTWK-ILRFSTLEDKF 229


>At5g26300.1 68418.m03144 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein low similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 349

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 112 TFGPSVYRANITRSVEDLPFVVKPPKNQFTQSALMHFNILMQLF 243
           +FG  ++     +  E + F+  PP N FT   ++HF+IL   F
Sbjct: 185 SFGAEIFIVKPAQQQEKVTFISNPPTNVFTWK-ILHFSILEDKF 227


>At5g13620.1 68418.m01578 expressed protein ; expression supported
           by MPSS
          Length = 301

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/54 (22%), Positives = 31/54 (57%)
 Frame = +1

Query: 133 RANITRSVEDLPFVVKPPKNQFTQSALMHFNILMQLFINKITTKRAILLTTIAF 294
           R +I +S++ + F++   K+    + +++FN L   FIN +  +  + L+ +++
Sbjct: 34  RRDINQSLQVMSFLLYLEKSGLVSNLIVNFNSLPDFFINTVADEVVMCLSCLSY 87


>At2g04170.1 68415.m00402 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to  NtN2 [Medicago truncatula] GI:3776084; contains Pfam
           profile PF00917: MATH domain
          Length = 420

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +1

Query: 112 TFGPSVYRANITRSVEDLPFVVKPPKNQFTQSALMHFNILMQLF 243
           +FG  ++     +  E + F+  PP N FT   ++HF+ L   F
Sbjct: 256 SFGAEIFSGTAVQVQEKVTFISNPPNNVFTWK-ILHFSNLEDKF 298


>At2g04190.1 68415.m00404 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 411

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 106 TTTFGPSVYRANITRSVEDLPFVVKPPKNQFTQSALMHFNIL 231
           T +FG  ++     +  E + F+  PP N FT   ++HF+ L
Sbjct: 245 TASFGAEIFLCPPIQVQEKVTFISNPPNNVFTWK-ILHFSTL 285


>At2g29050.1 68415.m03531 rhomboid family protein contains PFAM
           domain PF01694, Rhomboid family
          Length = 389

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -2

Query: 290 AIVVNKIALFVVILLINNC 234
           AIVV  IALF + + INNC
Sbjct: 61  AIVVANIALFAISMFINNC 79


>At2g38320.1 68415.m04708 expressed protein
          Length = 410

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +2

Query: 56  NLAYDIYKIKRIYTSSEQQPSDRRSTEQISPARWKIFPLSSSLPKINSLK 205
           N++Y +YK +     S+Q   ++   + +S   W+  P +  LP+ N  K
Sbjct: 70  NVSYPLYKEEDCKFMSDQLACEKFGRKDLSYKFWRWQPHTCDLPRFNGTK 119


>At1g63120.1 68414.m07133 rhomboid family protein contains PFAM
           domain PF01694, Rhomboid family
          Length = 317

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -2

Query: 290 AIVVNKIALFVVILLINNCIRMLKCINAL*VN*FLG 183
           AIVV  +A+F+ ++ +N+C + +   N   V  FLG
Sbjct: 38  AIVVANLAVFIAVMFVNDCPKKITGPNKECVARFLG 73


>At5g26320.1 68418.m03146 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 352

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +1

Query: 106 TTTFGPSVYRANITRSVEDLPFVVKPPKNQFTQSALMHFNILMQLF 243
           T +FG  +   N     E + F+  PP N FT   ++ F+ L   F
Sbjct: 186 TLSFGAEISIVNPAEKQEKITFISNPPDNVFTWK-ILRFSTLENKF 230


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,068,508
Number of Sequences: 28952
Number of extensions: 273183
Number of successful extensions: 586
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)