Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20526
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    30   0.26 
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    30   0.34 
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    29   0.79 
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    28   1.4  
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual      27   1.8  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    25   7.4  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    25   7.4  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    25   9.7  
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac...    25   9.7  
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    25   9.7  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    25   9.7  

>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
 Frame = -1

Query: 466 FLTIVSFVSFFFQLYFLRLQTLMQFLYLILME--HFLIVDHDYFCFYLHYIFFVYHLFPL 293
           F  ++ F+SF F   FL   + +  +Y       HFL       C +L ++F + HL  L
Sbjct: 120 FFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFFLCVCVFLSFLFSLSHLLSL 179

Query: 292 CIFVSYFPQYVDYTISR 242
            I        V  T+SR
Sbjct: 180 AILFLPLLLRVFSTLSR 196


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = -1

Query: 403 LMQFLYLILMEHFLIVDHDYF----CFYLHYIFFVYHLFPLCIFVSY 275
           L+ F+   L+ H +I+ H  F        H++FF +  FPL  F+ +
Sbjct: 151 LIPFINFFLLYHQIILSHSLFHISHLISFHFLFFSFLSFPLLSFILF 197


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 28.7 bits (61), Expect = 0.79
 Identities = 17/59 (28%), Positives = 32/59 (54%)
 Frame = +3

Query: 51  LIRSLKEILPNIFIMMNRKQKEENKNLE*DLKLHHYLTEVGLVLKNFC*KEIL*RSSCK 227
           L + L+ +LP  F+ +  K+K EN+ ++    LH  + E G  +K    +++  RS+ K
Sbjct: 269 LKKRLRGVLPPSFLTLQEKKKLENRGVKKKTSLHKSVIE-GEKIKGVARRKLHPRSTAK 326


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = +2

Query: 182  EELLLKRDSLKKQLQKFKHISRNGVINILRKIGNENTQREKM 307
            + ++ KRDSL++ L+KF+   +N   +IL     E T+++ M
Sbjct: 1415 DSIIKKRDSLREDLEKFRSTGKNS--SILEAQLREITKQKNM 1454


>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = -1

Query: 481 VID*IFLTIVSFVSFFFQLYFLRLQ 407
           VI  +FL+++ F+SF   ++F++LQ
Sbjct: 278 VIAFVFLSLIFFISFICPIWFIKLQ 302


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 259 QHTEENRKRKYTEGKDGKQKRYSEDKSKNSHGQQSKSA 372
           ++ +EN  RKY E  +G    Y+   + N + + S  A
Sbjct: 80  KYPDENEYRKYLESHNGISNAYTASNNTNYYFEVSHDA 117


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -1

Query: 619 SSFSENISVKSSVSPAEVGFTSVSF*SLPPLFFSIILQYFLNG 491
           S F +NI +K+    A VG     F   P      +LQY+  G
Sbjct: 435 SGFEDNIFIKNPNGSAYVGMAWPGFVVYPDFTNPAVLQYWKQG 477


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = +3

Query: 492 PFKKYWSIIEKNNGGNDQKLTDVNPTSAGETDDFTDMFSEKD 617
           P  +YW   E NN G   K+         + DD    FS+ D
Sbjct: 635 PEYEYWK--EANNNGRGWKIKYYKGLGTSDHDDMKSYFSDLD 674


>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
           Alg6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 506

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 587 ISLSSRSWVYISELLIITPIILFYN 513
           + L  RS V  S LLI+ P ++FY+
Sbjct: 126 LKLFMRSTVIASHLLILVPPLMFYS 150


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = -1

Query: 469 IFLTIVSFVSFFFQLYFLRLQTLMQFLYLILMEH-FLIVDHDYF-CFYLHYIFFVYHLFP 296
           +F +  SF    F L       + + ++L+L+   F+I  +  F CF+  +I+  Y L+P
Sbjct: 511 LFSSASSFNDLGFSLIPSSFVPMNRNIFLLLISSLFIIAGNTGFPCFFRTFIWTTYKLYP 570


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 51   LIRSLKEILPNIFIMMNRKQKEENKNLE*DLKLHHYL 161
            L+ SL E +  I +   + QK+ N + E +L+LH  L
Sbjct: 1902 LLSSLVERIKQIEMFALKTQKDSNNHREENLQLHRQL 1938


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,267,171
Number of Sequences: 5004
Number of extensions: 39886
Number of successful extensions: 148
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)