Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20526
         (664 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0788 - 24603849-24603949,24604030-24604123,24604206-246044...    31   1.1  
03_06_0670 + 35434203-35434355,35436601-35436729,35436978-354384...    30   1.4  
09_06_0205 - 21567467-21567655,21567791-21567876,21567965-215680...    29   4.4  
08_02_1336 - 26233081-26233312,26233814-26234672,26235218-26236736     28   5.8  

>06_03_0788 -
           24603849-24603949,24604030-24604123,24604206-24604413,
           24604727-24604839,24605679-24605816,24605916-24605999,
           24606517-24606675,24606754-24606837,24607505-24607840,
           24607941-24608042,24608970-24609153,24609699-24610044,
           24610444-24610591,24611053-24611203,24611786-24611867,
           24612314-24612362
          Length = 792

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 265 TEENRKRKYTEGKDGKQKRYSEDKSKNSHGQQSKSAP 375
           T  N+KRK + G     K  SEDK  ++ G  S++ P
Sbjct: 735 TVVNKKRKSSNGTRSMDKNNSEDKHDDAEGDSSQTQP 771


>03_06_0670 +
           35434203-35434355,35436601-35436729,35436978-35438409,
           35438524-35439014
          Length = 734

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 259 QHTEENRKRKYTEGKDGKQKRYSEDKSKNSHGQQSKSAPSK 381
           +H ++ + ++  EGKD K K  S+DK ++   ++ K    K
Sbjct: 101 KHKKDKKDKERKEGKDKKDKERSKDKHRDKKDRKEKHKDKK 141


>09_06_0205 - 21567467-21567655,21567791-21567876,21567965-21568037,
            21568267-21568326,21568887-21568935,21569328-21569431,
            21569587-21569640,21569719-21569763,21569817-21569879,
            21570415-21570615,21570620-21570797,21570900-21570993,
            21571075-21572478,21572560-21572604,21572710-21572788,
            21573424-21573589,21573679-21573771,21573872-21573929,
            21574063-21574120,21574210-21574367,21575130-21575177,
            21575269-21575320,21575404-21575529
          Length = 1160

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -1

Query: 412  LQTLMQFLYLILMEHFLIVDHDYFCFYLHYIFFVYHLF 299
            LQ   +F+ +I  E  L+VD + F FY+H ++ V  ++
Sbjct: 900  LQLDKKFIPVISGEVLLLVDQEEFIFYVHILYEVVSVY 937


>08_02_1336 - 26233081-26233312,26233814-26234672,26235218-26236736
          Length = 869

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +1

Query: 247 KW-CNQHTEENRKRKYTEGKDGKQKRYSEDKSKNSHGQQSKSA 372
           +W C   +E  R+R  T GKD +Q   S  ++K   G Q++ +
Sbjct: 617 EWKCENCSEIARRRSTTSGKDSEQMMASTSENKIVDGDQTEQS 659


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,961,873
Number of Sequences: 37544
Number of extensions: 200941
Number of successful extensions: 615
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)