Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20526
(664 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10) 37 0.013
SB_38403| Best HMM Match : PP2C (HMM E-Value=8.5e-35) 30 1.9
SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14) 30 1.9
SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17) 29 2.6
SB_28059| Best HMM Match : DUF149 (HMM E-Value=0.71) 29 3.4
SB_56505| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_41279| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_20105| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_44183| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
SB_33591| Best HMM Match : DnaJ (HMM E-Value=0.0056) 28 7.8
>SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)
Length = 1163
Score = 37.1 bits (82), Expect = 0.013
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Frame = -1
Query: 526 FFSIILQYFLNGY--HHVID*IFLTIVSFVSFFFQLYFLRLQTLMQFLYLILMEHF---L 362
FFSII +F HH I +T F S YF + T + + I+ HF +
Sbjct: 1001 FFSIITHHFFFSIITHHFFFSI-ITHHYFFSIITHHYFFVIIT-HHYFFSIITHHFFFSI 1058
Query: 361 IVDHDYFCFYLHYIFFV----YHLFPLCIFVSYF 272
I DH +F H+ FFV +++FP+ +F
Sbjct: 1059 ITDHYFFSIITHHYFFVIITHHYIFPIITHHDFF 1092
>SB_38403| Best HMM Match : PP2C (HMM E-Value=8.5e-35)
Length = 916
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +1
Query: 271 ENRKRKYTEGKDGKQKRYSEDKSKNSHGQQSKSA 372
+ ++K GK G+++R+SED+ + + SKSA
Sbjct: 171 KTEEKKNANGKMGQKERHSEDEEEKENKDDSKSA 204
>SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14)
Length = 1774
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 277 RKRKYTEGKDGKQKRYSEDKSKNSHGQQS 363
+K K++E +DG YSED S++S +S
Sbjct: 329 KKAKFSEDEDGFDSDYSEDSSRSSGSNES 357
>SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)
Length = 761
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/64 (28%), Positives = 33/64 (51%)
Frame = -1
Query: 469 IFLTIVSFVSFFFQLYFLRLQTLMQFLYLILMEHFLIVDHDYFCFYLHYIFFVYHLFPLC 290
IF+ +FV F F +F+ + F++L+ + +V ++ ++F VY F L
Sbjct: 705 IFIFFFAFVIFVFNAFFVFV-VFAFFVFLVFVFFVSVV-------FVFFVFVVYVFFALV 756
Query: 289 IFVS 278
+FVS
Sbjct: 757 VFVS 760
Score = 27.9 bits (59), Expect = 7.8
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = -1
Query: 466 FLTIV-SFVSFFFQLYFLRLQTLMQFLYLILMEHFLIVDHDYFCFYLHYIFFVYHLFPLC 290
FL +V +FV F F +F F+ + F+ V +F F L ++FFV +F
Sbjct: 694 FLFVVFAFVVFIFIFFFA-------FVIFVFNAFFVFVVFAFFVF-LVFVFFVSVVFVFF 745
Query: 289 IFVSY 275
+FV Y
Sbjct: 746 VFVVY 750
>SB_28059| Best HMM Match : DUF149 (HMM E-Value=0.71)
Length = 1043
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 256 NQHTEENRKRKYTEGKDGKQKRYSEDKSKNSHGQQSKSAPSK 381
NQ TEEN K TEG + + S+ K K ++ + SK
Sbjct: 819 NQTTEENNASKRTEGTFEIELKMSDKKKKEESDEEFRDDTSK 860
>SB_56505| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 959
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 274 NRKRKYTEGKDGKQKRYSEDKSKNSHGQQSKSAPSK 381
+R K+ E + KQK ++ S+ S Q+ K +P K
Sbjct: 505 HRSEKHVEAQSPKQKTSKKNNSEKSKRQEDKKSPKK 540
>SB_41279| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 599
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +1
Query: 268 EENRKRKYTEGKDGKQ-KRYSEDKSKNSHGQQSK 366
E+NRKRK + +D Q KR KSK G+ K
Sbjct: 542 EQNRKRKASVAEDDHQSKRRKLSKSKKEKGEMEK 575
>SB_20105| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 261
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 262 HTEENRKRKYTEGKDGKQKRYSE-DKSKNSHGQQSK 366
H E+++K K D K+K ++E DK + H QQ +
Sbjct: 50 HAEDDKKEKVHAEDDKKEKVHAEDDKKEKVHAQQRR 85
>SB_44183| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 751
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = -1
Query: 568 VGFTSV-SF*SLPPLFFSIILQYFL--NGYHHVID*IFLTIVSFVSFFFQLY 422
V FT F +L P+F +I ++ +G H +I+ + L ++S V F Q+Y
Sbjct: 325 VQFTQTRKFFTLIPIFLFMITSFYTKYDGIHFIINAVSLLLLSLVPKFPQMY 376
>SB_33591| Best HMM Match : DnaJ (HMM E-Value=0.0056)
Length = 219
Score = 27.9 bits (59), Expect = 7.8
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = -1
Query: 526 FFSIILQYFLNGYHHVID*IFLTIVS-FVSFFFQLYFLRLQTLMQFLYLILMEHFLIVDH 350
F I+ +YF+ ++ F+ IV F Q YF+ + + ++ +I+ E+F+++
Sbjct: 122 FVVIVQEYFVV----IVQEYFVVIVQEFFVVIVQEYFVVI--VQEYFVVIVQEYFVVIVQ 175
Query: 349 DYFCFYLHYIFFV 311
+YF + F V
Sbjct: 176 EYFVVIVQEYFVV 188
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,471,479
Number of Sequences: 59808
Number of extensions: 248631
Number of successful extensions: 938
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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