Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20526
         (664 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   2.6  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   6.0  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   6.0  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   6.0  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   7.9  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    21   7.9  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 26  FSYNIVTMADKKPKRNSS 79
           F Y  +T+ +KKP R+S+
Sbjct: 539 FKYQGITILEKKPSRSST 556


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 501 KYWSIIEKNNGGNDQ 545
           KY  +IE+N+G  D+
Sbjct: 370 KYLDVIERNSGATDK 384


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 501 KYWSIIEKNNGGNDQ 545
           KY  +IE+N+G  D+
Sbjct: 370 KYLDVIERNSGATDK 384


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 501 KYWSIIEKNNGGNDQ 545
           KY  +IE+N+G  D+
Sbjct: 370 KYLDVIERNSGATDK 384


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 65  KRNSSKYFYYDE 100
           KRN S Y Y+DE
Sbjct: 2   KRNISNYSYHDE 13


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 65  KRNSSKYFYYDE 100
           KRN S Y Y+DE
Sbjct: 2   KRNISNYSYHDE 13


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,789
Number of Sequences: 438
Number of extensions: 2793
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)