Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20526
         (664 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g03153.1 68417.m00429 kinase interacting family protein simil...    29   3.6  
At1g62935.1 68414.m07106 hypothetical protein                          28   4.8  
At1g11220.1 68414.m01285 expressed protein contains similarity t...    28   4.8  
At3g28770.1 68416.m03591 expressed protein                             28   6.4  
At4g07520.1 68417.m01174 hypothetical protein contains Pfam prof...    27   8.4  
At1g32270.1 68414.m03971 syntaxin, putative similar to syntaxin ...    27   8.4  

>At4g03153.1 68417.m00429 kinase interacting family protein similar
           to kinase interacting protein 1 (GI:13936326) [Petunia
           integrifolia]
          Length = 215

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 343 FCFYLHYIFFVYHLFPLCIFVSYFP 269
           FCF  ++  F YHL   C+  S+ P
Sbjct: 170 FCFQFNWEIFSYHLLRFCLLFSHDP 194


>At1g62935.1 68414.m07106 hypothetical protein
          Length = 176

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 20/67 (29%), Positives = 34/67 (50%)
 Frame = -1

Query: 499 LNGYHHVID*IFLTIVSFVSFFFQLYFLRLQTLMQFLYLILMEHFLIVDHDYFCFYLHYI 320
           LN   +V++ I+ TIVS +  FF L +     L+ F +L  +   LI+D +   +     
Sbjct: 2   LNIIINVMEIIWRTIVSTLMLFFFLRYFN-NPLLLFFFLCTILFLLIIDRNRSVYEETGD 60

Query: 319 FFVYHLF 299
           F+V + F
Sbjct: 61  FYVLYTF 67


>At1g11220.1 68414.m01285 expressed protein contains similarity to
           cotton fiber expressed protein 1 [Gossypium hirsutum]
           gi|3264828|gb|AAC33276
          Length = 310

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 22/77 (28%), Positives = 39/77 (50%)
 Frame = -1

Query: 658 SFLSTLRRSLILKSSFSENISVKSSVSPAEVGFTSVSF*SLPPLFFSIILQYFLNGYHHV 479
           S + +++ +LI     + ++ +KSSV P  V F+   F    P+F+S  L +    Y  V
Sbjct: 3   SSMISIKAALITAGIVAVSLFLKSSV-PIAVDFSVSRF----PIFWSSFLSWLKPPYLFV 57

Query: 478 ID*IFLTIVSFVSFFFQ 428
              + +TI+   S F+Q
Sbjct: 58  AINVIITIIMASSKFYQ 74


>At3g28770.1 68416.m03591 expressed protein 
          Length = 2081

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 271  ENRKRKYTEGKDGKQKRYSEDK-SKNSHGQQSKSAPSK 381
            EN K K  E KD K+K+ SED  SKN   ++ +   SK
Sbjct: 985  ENSKLK-EENKDNKEKKESEDSASKNREKKEYEEKKSK 1021


>At4g07520.1 68417.m01174 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 734

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 256 NQHTEENRKRKYTEGKDGKQKRYSEDKSKNSHGQQ 360
           +Q  EEN K +  EG++ + +   +D+   SHG +
Sbjct: 103 SQGMEENPKEEEKEGEEEESEEIDDDEPMPSHGME 137


>At1g32270.1 68414.m03971 syntaxin, putative similar to syntaxin
           related protein AtVam3p (GP:8809669) (Arabidopsis
           thaliana); similar to syntaxin GB:CAB78776 GI:7268526
           from (Arabidopsis thaliana); contains Pfam profile
           PF05739: SNARE domain
          Length = 416

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 250 WCNQHTEENRKRKYTEGKDGKQKRYSEDKSKN 345
           WC +  EE RK K  + K   +KR  E+K  N
Sbjct: 373 WCEEEDEEQRK-KQQKKKTMSEKRRREEKKVN 403


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,244,604
Number of Sequences: 28952
Number of extensions: 187516
Number of successful extensions: 689
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)