Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20525
(445 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39921| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.99
SB_22050| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26) 29 2.3
SB_43651| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.0
SB_25976| Best HMM Match : RVT_1 (HMM E-Value=5.3e-22) 28 3.0
SB_51094| Best HMM Match : VWA (HMM E-Value=0) 25 5.2
SB_15843| Best HMM Match : VWA (HMM E-Value=4.1e-35) 25 5.5
SB_8535| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.0
SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26) 27 7.0
SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 27 7.0
SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25) 27 7.0
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9) 27 9.2
>SB_39921| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 29.9 bits (64), Expect = 0.99
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 5 TCVSQNTGTCPESSCACPEISCACPETSCACPESS 109
T T P+++ A PE + A PE + A PE++
Sbjct: 33 TAAPDATTAAPDATTAAPEATTAAPEATTAAPEAT 67
Score = 29.5 bits (63), Expect = 1.3
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 5 TCVSQNTGTCPESSCACPEISCACPETSCACPESS 109
T T P+++ A P+ + A PE + A PE++
Sbjct: 26 TAAPMETTAAPDATTAAPDATTAAPEATTAAPEAT 60
Score = 28.3 bits (60), Expect = 3.0
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 5 TCVSQNTGTCPESSCACPEISCACPETSCACP 100
T T PE++ A PE + A PE + A P
Sbjct: 40 TAAPDATTAAPEATTAAPEATTAAPEATTAAP 71
>SB_22050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 233
Score = 29.1 bits (62), Expect = 1.7
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +2
Query: 8 CVSQNTGTCPESSCACPEISCACPETSC 91
CVS P + ACP ++ AC SC
Sbjct: 80 CVSYRYDRVPYLTSACPNVTSACQRVSC 107
>SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26)
Length = 1536
Score = 28.7 bits (61), Expect = 2.3
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +2
Query: 8 CVSQNTGTCPESSCACPEISCACPETSCACPESS 109
C+ N C + + C S CP+ S CP+S+
Sbjct: 998 CLKDNV-MCSKDAVTCQNRSVTCPKYSVLCPDSN 1030
Score = 27.9 bits (59), Expect = 4.0
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 14 SQNTGTCPESSCACPEISCACPETSCACPESS 109
S++ TC S CP+ S CP+++ E+S
Sbjct: 1006 SKDAVTCQNRSVTCPKYSVLCPDSNVEPNETS 1037
>SB_43651| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 274
Score = 28.3 bits (60), Expect = 3.0
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 17 QNTGTCPESSCACPEISCACPETSCACPESS 109
+ T PE + A PE + PE + CPE +
Sbjct: 84 EGNSTSPEGNSASPEGNSTSPEGNSTCPEGN 114
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 17 QNTGTCPESSCACPEISCACPETSCACPESS 109
+ T PE + A PE + A PE + A PE +
Sbjct: 133 EGNSTSPEGNSASPEGNSASPEGNSASPEGN 163
Score = 26.6 bits (56), Expect = 9.2
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +2
Query: 17 QNTGTCPESSCACPEISCACPETSCACPESS 109
+ T PE + CPE + PE + PE +
Sbjct: 98 EGNSTSPEGNSTCPEGNSTSPEGNSTSPEGN 128
Score = 26.6 bits (56), Expect = 9.2
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +2
Query: 17 QNTGTCPESSCACPEISCACPETSCACPESS 109
+ TCPE + PE + PE + PE +
Sbjct: 105 EGNSTCPEGNSTSPEGNSTSPEGNSTSPEGN 135
>SB_25976| Best HMM Match : RVT_1 (HMM E-Value=5.3e-22)
Length = 1421
Score = 28.3 bits (60), Expect = 3.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 8 CVSQNTGTCPESSCACPEISCACPETSCAC 97
C +TG P ++C C I P+T+C C
Sbjct: 892 CCLMDTGL-PHTACQCCLIGTGLPQTACQC 920
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +2
Query: 8 CVSQNTGTCPESSCACPEISCACPETSCAC 97
C +TG P ++C C I P T+C C
Sbjct: 962 CRLMDTGL-PHTACQCRLIDTGLPHTACQC 990
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +2
Query: 8 CVSQNTGTCPESSCACPEISCACPETSCAC 97
C +TG P ++C C I P T+C C
Sbjct: 1004 CRLMDTGL-PHTACQCRLIDTGLPHTACQC 1032
>SB_51094| Best HMM Match : VWA (HMM E-Value=0)
Length = 3544
Score = 24.6 bits (51), Expect(2) = 5.2
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +2
Query: 17 QNTGTCPESSCACP 58
Q+ G C ES C CP
Sbjct: 1524 QHGGVCTESGCMCP 1537
Score = 21.0 bits (42), Expect(2) = 5.2
Identities = 6/11 (54%), Positives = 7/11 (63%)
Frame = +2
Query: 74 CPETSCACPES 106
C E+ C CP S
Sbjct: 1529 CTESGCMCPSS 1539
>SB_15843| Best HMM Match : VWA (HMM E-Value=4.1e-35)
Length = 1686
Score = 24.6 bits (51), Expect(2) = 5.5
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +2
Query: 17 QNTGTCPESSCACP 58
Q+ G C ES C CP
Sbjct: 1266 QHGGVCTESGCMCP 1279
Score = 21.0 bits (42), Expect(2) = 5.5
Identities = 6/11 (54%), Positives = 7/11 (63%)
Frame = +2
Query: 74 CPETSCACPES 106
C E+ C CP S
Sbjct: 1271 CTESGCMCPSS 1281
>SB_8535| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 236
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = +2
Query: 8 CVSQNTGT--CPESSCACPEISCACPETSCACPESSC 112
C S +GT CP ++ + C + +C C +SC
Sbjct: 173 CYSCESGTDVCPLATPCASQFGITCRKLTCFCSRTSC 209
>SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)
Length = 351
Score = 27.1 bits (57), Expect = 7.0
Identities = 9/25 (36%), Positives = 11/25 (44%)
Frame = +2
Query: 38 ESSCACPEISCACPETSCACPESSC 112
E +CAC CP+ C P C
Sbjct: 69 ERNCACRSAEFKCPDGKCVHPSKFC 93
>SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1973
Score = 27.1 bits (57), Expect = 7.0
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -2
Query: 87 LVSGQAQLISGQAQLLSGQVPVFWLT 10
++ GQ Q++SG AQ + G + W++
Sbjct: 1945 IIDGQRQVVSGHAQKIRGAQALVWVS 1970
>SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)
Length = 147
Score = 27.1 bits (57), Expect = 7.0
Identities = 9/25 (36%), Positives = 11/25 (44%)
Frame = +2
Query: 38 ESSCACPEISCACPETSCACPESSC 112
E +CAC CP+ C P C
Sbjct: 69 ERNCACRSAEFKCPDGKCVHPSKFC 93
>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
Length = 451
Score = 26.6 bits (56), Expect = 9.2
Identities = 7/23 (30%), Positives = 13/23 (56%)
Frame = +2
Query: 29 TCPESSCACPEISCACPETSCAC 97
+C + C+C + C+C C+C
Sbjct: 374 SCRVACCSCRVVCCSCRVVCCSC 396
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,181,091
Number of Sequences: 59808
Number of extensions: 54503
Number of successful extensions: 396
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -