Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20525
         (445 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g23380.1 68415.m02792 curly leaf protein (CURLY LEAF) / polyc...    31   0.26 
At1g32190.1 68414.m03959 expressed protein                             31   0.26 
At4g30860.1 68417.m04381 SET domain-containing protein low simil...    27   5.7  
At3g19390.1 68416.m02459 cysteine proteinase, putative / thiol p...    26   10.0 

>At2g23380.1 68415.m02792 curly leaf protein (CURLY LEAF) /
           polycomb-group protein identical to polycomb group
           [Arabidopsis thaliana] GI:1903019 (curly leaf); contains
           Pfam profile PF00856: SET domain
          Length = 902

 Score = 31.5 bits (68), Expect = 0.26
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = +2

Query: 8   CVSQNTGTCPESSCACPEISCACPETSCACPESSC 112
           C     GTC E  C CP+ SC      C C +S C
Sbjct: 665 CPCLLNGTCCEKYCGCPK-SCKNRFRGCHCAKSQC 698


>At1g32190.1 68414.m03959 expressed protein
          Length = 422

 Score = 31.5 bits (68), Expect = 0.26
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 29  TCPESSCACPEISCACPETSCACPESSC 112
           +CP+  C  P  SC C    C C + SC
Sbjct: 306 SCPKPRCPKPSCSCGCGCGDCGCFKCSC 333



 Score = 30.7 bits (66), Expect = 0.46
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 23  TGTCPESSCACPEISCACPETSCACPESSC 112
           +G C   SC+CP+  C  P  SC C    C
Sbjct: 298 SGLC-RPSCSCPKPRCPKPSCSCGCGCGDC 326



 Score = 27.5 bits (58), Expect = 4.3
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 41  SSCACPEISCACPETSCACPESSC 112
           SSC CP   C+       CP+ SC
Sbjct: 350 SSCCCPTFKCSSCFGKPKCPKCSC 373


>At4g30860.1 68417.m04381 SET domain-containing protein low
           similarity to IL-5 promoter REII-region-binding protein
           [Homo sapiens] GI:12642795; contains Pfam profile
           PF00856: SET domain
          Length = 497

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 20  NTGTCPESSCACPEISCACPETSCACPES 106
           N G   + SC C  + C      C+CPES
Sbjct: 289 NCGPNCDRSCVC-RVQCISCSKGCSCPES 316


>At3g19390.1 68416.m02459 cysteine proteinase, putative / thiol
           protease, putative contains similarity to cysteine
           proteinase RD21A (thiol protease) GI:435619, SP:P43297
           from [Arabidopsis thaliana]
          Length = 452

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +2

Query: 8   CVSQNTGTCPESSCACPEISCACPETSCACPES 106
           C+ +  G C    C   E +  C + S  CP+S
Sbjct: 377 CLYEYNGKCYSWGCCPYESATCCDDGSSCCPQS 409


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,732,039
Number of Sequences: 28952
Number of extensions: 37234
Number of successful extensions: 150
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 712739520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)