Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20523
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch...   120   1e-28
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual     89   6e-19
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc...    26   3.6  
SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom...    26   4.7  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   6.2  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    25   8.3  
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1...    25   8.3  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    25   8.3  

>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
           Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  120 bits (290), Expect = 1e-28
 Identities = 65/111 (58%), Positives = 68/111 (61%)
 Frame = +3

Query: 258 RTQKNKATEYHLGLLKAKLAKYRSQLLEPSKKGGDKGEGFDVLKSGDARVALIGFPSVGK 437
           RTQKNKATEYHLGLLK KLAK R+QLLEP+ K G KGEGFDVLKSGDARVA IGFPSVGK
Sbjct: 16  RTQKNKATEYHLGLLKGKLAKLRAQLLEPTSKSGPKGEGFDVLKSGDARVAFIGFPSVGK 75

Query: 438 XXXXXXXXXXXXEAASXXXXXXXXXXXXXNIAVPTYNC*DLPGIIEGAAQG 590
                         AS                       DLPGIIEGA+QG
Sbjct: 76  STLLSAITKTKSATASYEFTTLTAIPGVLEYDGAEIQMLDLPGIIEGASQG 126



 Score = 30.7 bits (66), Expect = 0.17
 Identities = 14/21 (66%), Positives = 16/21 (76%)
 Frame = +1

Query: 214 MGILEKISEIEKEMREHRKIK 276
           MG+LEKI EIE EMR  +K K
Sbjct: 1   MGVLEKIQEIEAEMRRTQKNK 21


>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 88.6 bits (210), Expect = 6e-19
 Identities = 50/112 (44%), Positives = 59/112 (52%)
 Frame = +3

Query: 255 ARTQKNKATEYHLGLLKAKLAKYRSQLLEPSKKGGDKGEGFDVLKSGDARVALIGFPSVG 434
           A+TQKNKAT  HLG+LKAKLAK + +L+ P+  GG  G GFDV ++G   V  IGFPSVG
Sbjct: 16  AKTQKNKATAKHLGMLKAKLAKLKRELITPTGGGGGGGLGFDVARTGIGTVGFIGFPSVG 75

Query: 435 KXXXXXXXXXXXXEAASXXXXXXXXXXXXXNIAVPTYNC*DLPGIIEGAAQG 590
           K            EAA+                       DLPGIIEGA  G
Sbjct: 76  KSTLMTQLTGTRSEAAAYEFTTLTTVPGVLQYNGAKIQILDLPGIIEGAKDG 127


>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
           Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/32 (34%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = +1

Query: 196 QITRRIMGILEKISEIEKEMREH-RKIKRLNI 288
           +++++++ + +K+ EIEK   EH R  KR+ I
Sbjct: 325 ELSQKLIPVRDKLREIEKNDEEHERAAKRIKI 356


>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 233

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 9/29 (31%), Positives = 21/29 (72%)
 Frame = +1

Query: 196 QITRRIMGILEKISEIEKEMREHRKIKRL 282
           ++T  ++G+L  +SE+E+E  E  +I+++
Sbjct: 132 RLTGELLGLLTTLSELEQERSELEQIEKM 160


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -2

Query: 483  LLLLNVCE*GSIKGLTYPQKESLSKQLEHHQTLVHRNLHLCLH 355
            L LL + E  +     YP +     Q+   Q  VH++  LCLH
Sbjct: 2041 LSLLQIQEFSTQAVFRYPSRRLSLDQIPCKQCGVHQDFDLCLH 2083


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -1

Query: 457 RVDKRVDLPTEGK-PIKATRASPDFSTSKPSPLSPP 353
           R+     LPT    P+K   + P  + ++PSPLS P
Sbjct: 364 RMSSITSLPTASFCPVKHGVSPPSLAGNQPSPLSSP 399


>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 588

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
 Frame = -2

Query: 447 KGLTYPQKESLSKQLEHHQTLVHRNLHLCLHLFLKVP--ATVIYILLIWLLKDPSDIQSL 274
           K  T P +  L ++++  +    + L++ +   + VP  A +IYI +I  LKDP + ++L
Sbjct: 413 KRRTLPVEAYLIRKVQKWEDRAEK-LNISIADAMDVPPYAELIYIFVICSLKDPKEAEAL 471


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -1

Query: 268  FCVLAFLSQFLIFSLISP*FG--ELSDN 191
            +C +AF+  FL+F +    FG  EL+DN
Sbjct: 1386 WCSIAFIQAFLVFYVTYSLFGMKELNDN 1413


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,214,273
Number of Sequences: 5004
Number of extensions: 42302
Number of successful extensions: 128
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)