Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20523
(592 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0671 + 16831185-16831254,16832017-16832084,16832318-168323... 105 2e-23
07_03_1353 - 25966332-25966421,25966477-25966528,25966612-259668... 105 3e-23
10_03_0019 - 7123502-7123673,7124145-7124226,7124228-7124394,712... 29 2.8
04_04_0051 - 22371490-22371658,22372333-22372778,22373880-223740... 29 2.8
02_05_0562 - 29970207-29970224,29970290-29970364,29971083-299714... 28 4.8
12_02_1203 + 26959225-26959340,26959644-26959776 28 6.4
10_08_1008 - 22222051-22222377,22222479-22222640,22223179-222233... 27 8.5
>05_03_0671 +
16831185-16831254,16832017-16832084,16832318-16832394,
16832910-16833090,16833192-16833248,16834182-16834256,
16834820-16834939,16835018-16835224
Length = 284
Score = 105 bits (253), Expect = 2e-23
Identities = 59/112 (52%), Positives = 65/112 (58%)
Frame = +3
Query: 255 ARTQKNKATEYHLGLLKAKLAKYRSQLLEPSKKGGDKGEGFDVLKSGDARVALIGFPSVG 434
ARTQKNKATEYHLG LKAK+AK R+QLLEP K G+GF+V K G RVALIGFPSVG
Sbjct: 15 ARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSTGGGDGFEVTKFGHGRVALIGFPSVG 74
Query: 435 KXXXXXXXXXXXXEAASXXXXXXXXXXXXXNIAVPTYNC*DLPGIIEGAAQG 590
K EAAS DLPGIIEGA++G
Sbjct: 75 KSTLLTMLTGTHSEAASYEFTTLTCIPGIIQYNDTKIQLLDLPGIIEGASEG 126
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 214 MGILEKISEIEKEMREHRKIK 276
MGILE+I EIE EM +K K
Sbjct: 1 MGILERIKEIEAEMARTQKNK 21
>07_03_1353 -
25966332-25966421,25966477-25966528,25966612-25966803,
25966900-25967199,25967816-25967925,25968696-25968755,
25968835-25968906,25969172-25969348,25969845-25969898,
25970188-25970217,25970985-25971026
Length = 392
Score = 105 bits (252), Expect = 3e-23
Identities = 60/114 (52%), Positives = 65/114 (57%), Gaps = 2/114 (1%)
Frame = +3
Query: 255 ARTQKNKATEYHLGLLKAKLAKYRSQLLEPSKK--GGDKGEGFDVLKSGDARVALIGFPS 428
ARTQKNKAT +HLGLLKAKLAK R +LL P+ K GG GEGFDV KSGDARV L+GFPS
Sbjct: 26 ARTQKNKATAHHLGLLKAKLAKLRRELLTPTSKGGGGGAGEGFDVTKSGDARVGLVGFPS 85
Query: 429 VGKXXXXXXXXXXXXEAASXXXXXXXXXXXXXNIAVPTYNC*DLPGIIEGAAQG 590
VGK E A+ DLPGIIEGA G
Sbjct: 86 VGKSTLLNKLTGTFSEVAAYEFTTLTCIPGVIMYKGAKIQLLDLPGIIEGAKDG 139
>10_03_0019 -
7123502-7123673,7124145-7124226,7124228-7124394,
7124569-7125182
Length = 344
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = -2
Query: 381 HRNLHLCLHLFLKVPATVIYI 319
HR+LHL LHL L PAT I +
Sbjct: 34 HRHLHLDLHLPLPPPATAILV 54
>04_04_0051 -
22371490-22371658,22372333-22372778,22373880-22374054,
22374134-22374240,22374358-22374646,22374942-22375075,
22375228-22375423,22375611-22375719,22375839-22375965
Length = 583
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +1
Query: 199 ITRRIMGILEKISEIEKEMREHRKIKRLNITW 294
I+RR++GI+ +S+ R HR + +L +T+
Sbjct: 525 ISRRLVGIVRSMSKFPTYRRRHRHVMKLLVTY 556
>02_05_0562 -
29970207-29970224,29970290-29970364,29971083-29971441,
29971572-29971713,29971906-29972025,29972139-29972216,
29972330-29972429,29972522-29972571,29972827-29972904,
29973624-29973751,29973776-29973977,29974045-29974144,
29974236-29974551,29974645-29974690,29975526-29975622,
29977254-29977258,29977643-29977708,29978631-29978690,
29979167-29979272,29979513-29979658,29980731-29980813,
29980951-29981056,29996243-29996266,29996378-29996438,
29996467-29996750,29996914-29997096
Length = 1010
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 181 VVNSCQITRRIMGILEKISEIEKEMREHRK 270
++ +CQ+ I G + KI KEMR HR+
Sbjct: 346 LIMACQLQNEITGDVLKIQMQNKEMRHHRQ 375
>12_02_1203 + 26959225-26959340,26959644-26959776
Length = 82
Score = 27.9 bits (59), Expect = 6.4
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = -2
Query: 369 HLCLHLFLKVPATVIYILLIWLLKDPSDI 283
+L LH+ +K P ++Y + W++ D +D+
Sbjct: 44 NLVLHVGVKPPGKIVYFDMPWIIGDATDL 72
>10_08_1008 -
22222051-22222377,22222479-22222640,22223179-22223310,
22224556-22224608,22224713-22225256
Length = 405
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -1
Query: 433 PTEGKPIKATRASPDFSTSKPSPLSPPFFEGSSN 332
P E + ++ A P +T P+P++ P EG+S+
Sbjct: 312 PVETRKVEPMSAPPQMATYVPAPVASPPSEGTSS 345
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,114,672
Number of Sequences: 37544
Number of extensions: 238332
Number of successful extensions: 715
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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