Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20523
(592 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14133| Best HMM Match : TGS (HMM E-Value=2.2e-36) 123 1e-28
SB_43010| Best HMM Match : MMR_HSR1 (HMM E-Value=1.9e-05) 109 2e-24
SB_56785| Best HMM Match : TGS (HMM E-Value=6.2e-31) 46 2e-05
SB_25320| Best HMM Match : 7tm_1 (HMM E-Value=3.29305e-43) 33 0.13
SB_7469| Best HMM Match : FerB (HMM E-Value=1.1) 29 2.8
SB_41921| Best HMM Match : 7tm_1 (HMM E-Value=2e-39) 28 5.0
SB_41024| Best HMM Match : DIL (HMM E-Value=1.3e-30) 28 5.0
SB_20148| Best HMM Match : Cu_bind_like (HMM E-Value=3) 28 6.6
>SB_14133| Best HMM Match : TGS (HMM E-Value=2.2e-36)
Length = 365
Score = 123 bits (297), Expect = 1e-28
Identities = 68/113 (60%), Positives = 72/113 (63%), Gaps = 1/113 (0%)
Frame = +3
Query: 255 ARTQKNKATEYHLGLLKAKLAKYRSQLLEPSK-KGGDKGEGFDVLKSGDARVALIGFPSV 431
ARTQKNKATEYHLGLLKAKLAKYR+QLLEP+K KG+GFDV+KSGDARVALIGFPSV
Sbjct: 15 ARTQKNKATEYHLGLLKAKLAKYRAQLLEPAKGSSSAKGDGFDVMKSGDARVALIGFPSV 74
Query: 432 GKXXXXXXXXXXXXEAASXXXXXXXXXXXXXNIAVPTYNC*DLPGIIEGAAQG 590
GK AS N DLPGIIEGAAQG
Sbjct: 75 GKSTLLTKLTQTQSACASYEFTTLTCIPGVINYNGANIQLLDLPGIIEGAAQG 127
Score = 31.1 bits (67), Expect = 0.70
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = +1
Query: 214 MGILEKISEIEKEMREHRKIK 276
MGILEKISEIEKE+ +K K
Sbjct: 1 MGILEKISEIEKEIARTQKNK 21
>SB_43010| Best HMM Match : MMR_HSR1 (HMM E-Value=1.9e-05)
Length = 141
Score = 109 bits (261), Expect = 2e-24
Identities = 53/62 (85%), Positives = 57/62 (91%), Gaps = 1/62 (1%)
Frame = +3
Query: 255 ARTQKNKATEYHLGLLKAKLAKYRSQLLEPSK-KGGDKGEGFDVLKSGDARVALIGFPSV 431
ARTQKNKATEYHLGLLKAKLAKYR+QLLEP+K KG+GFDV+KSGDARVALIGFPSV
Sbjct: 15 ARTQKNKATEYHLGLLKAKLAKYRAQLLEPAKGSSSAKGDGFDVMKSGDARVALIGFPSV 74
Query: 432 GK 437
GK
Sbjct: 75 GK 76
Score = 31.1 bits (67), Expect = 0.70
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = +1
Query: 214 MGILEKISEIEKEMREHRKIK 276
MGILEKISEIEKE+ +K K
Sbjct: 1 MGILEKISEIEKEIARTQKNK 21
>SB_56785| Best HMM Match : TGS (HMM E-Value=6.2e-31)
Length = 303
Score = 46.0 bits (104), Expect = 2e-05
Identities = 26/69 (37%), Positives = 30/69 (43%)
Frame = +3
Query: 375 FDVLKSGDARVALIGFPSVGKXXXXXXXXXXXXEAASXXXXXXXXXXXXXNIAVPTYNC* 554
FDV K+GDAR+ +GFPSVGK E A+
Sbjct: 41 FDVAKTGDARIGFVGFPSVGKSTLLTNLAGVYSEVAAYEFTTLTTVPGVIRYKGAKIQLL 100
Query: 555 DLPGIIEGA 581
DLPGIIEGA
Sbjct: 101 DLPGIIEGA 109
>SB_25320| Best HMM Match : 7tm_1 (HMM E-Value=3.29305e-43)
Length = 391
Score = 33.5 bits (73), Expect = 0.13
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = -2
Query: 444 GLTYPQKESLSKQLEHHQTLVHRNLHLCLHLFLKVPATVIYILLI--WLLKDPSDIQSLY 271
G + ++E+ +Q + H + + C + L P V YIL I W L+ P + +L+
Sbjct: 233 GQDFARREAREEQQKRHIVKLAATIVFCFAI-LWAPMHVFYILYIFKWHLRLPCGLMALH 291
Query: 270 FSVF 259
FSVF
Sbjct: 292 FSVF 295
>SB_7469| Best HMM Match : FerB (HMM E-Value=1.1)
Length = 277
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = -2
Query: 432 PQKESLSKQLEHHQTLVHRNLHLCLHLFLKVPATVIYILLIWLLKDPSDIQSLYFSVFS 256
PQ++S+ K ++ T H + L ++ + +I + L W LKD Q L FS+ S
Sbjct: 57 PQRKSVLKGIQSLMT-AHYMIFLTTVFYVGIAMGLIKVFLFWHLKDLGGTQML-FSIMS 113
>SB_41921| Best HMM Match : 7tm_1 (HMM E-Value=2e-39)
Length = 335
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/35 (48%), Positives = 21/35 (60%)
Frame = -1
Query: 322 YFANLAFKRPK*YSVALFFCVLAFLSQFLIFSLIS 218
YF A KR + Y VAL FCV FL FL+ L++
Sbjct: 161 YFIGWAIKRAEFYVVAL-FCV-GFLIPFLVILLVN 193
>SB_41024| Best HMM Match : DIL (HMM E-Value=1.3e-30)
Length = 1440
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = -1
Query: 409 ATRASPDF--STSKPSPLSPPFFEGSSNCD 326
+ +ASP F S S+ SP SPP GSS D
Sbjct: 221 SNKASPRFAISPSRDSPTSPPLRPGSSGSD 250
>SB_20148| Best HMM Match : Cu_bind_like (HMM E-Value=3)
Length = 428
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -2
Query: 426 KESLSKQLEHHQTLVHRNLHLCLHLFLKVPATVI 325
K +++KQ++ +T HR+L L L VPAT +
Sbjct: 38 KHAIAKQVKRAKTGFHRSLTLAHKLLYAVPATPV 71
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,809,964
Number of Sequences: 59808
Number of extensions: 285768
Number of successful extensions: 799
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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