Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20523
         (592 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14745-12|AAR25659.1|  366|Caenorhabditis elegans Hypothetical p...   129   1e-30
Z81134-8|CAB57908.1|  366|Caenorhabditis elegans Hypothetical pr...   100   7e-22
AL117202-33|CAB55097.1|  366|Caenorhabditis elegans Hypothetical...   100   7e-22
Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.      30   1.4  
AY077615-1|AAL79359.1|  510|Caenorhabditis elegans KSR-2b protein.     28   4.3  
AL137227-5|CAB70240.2|  510|Caenorhabditis elegans Hypothetical ...    28   4.3  
AF125451-5|AAD12824.1| 1086|Caenorhabditis elegans Taf (tbp-asso...    27   7.5  
AF077533-2|AAP40529.1|  972|Caenorhabditis elegans Hypothetical ...    27   7.5  
AF077533-1|AAZ91357.1| 1126|Caenorhabditis elegans Hypothetical ...    27   7.5  
Z70208-8|CAA94143.1|  196|Caenorhabditis elegans Hypothetical pr...    27   10.0 
U80444-2|AAB37788.1|  305|Caenorhabditis elegans Collagen protei...    27   10.0 
U58754-6|AAK72081.1|  325|Caenorhabditis elegans Serpentine rece...    27   10.0 

>L14745-12|AAR25659.1|  366|Caenorhabditis elegans Hypothetical
           protein C02F5.3 protein.
          Length = 366

 Score =  129 bits (312), Expect = 1e-30
 Identities = 67/112 (59%), Positives = 74/112 (66%)
 Frame = +3

Query: 255 ARTQKNKATEYHLGLLKAKLAKYRSQLLEPSKKGGDKGEGFDVLKSGDARVALIGFPSVG 434
           +RTQKNKATEYHLGLLKAKLAKYR QLLEP+ KGG KGEGFDV+KSGDARVA++GFPSVG
Sbjct: 15  SRTQKNKATEYHLGLLKAKLAKYRQQLLEPTGKGGAKGEGFDVMKSGDARVAMVGFPSVG 74

Query: 435 KXXXXXXXXXXXXEAASXXXXXXXXXXXXXNIAVPTYNC*DLPGIIEGAAQG 590
           K            EAA              +         DLPGIIEGA+QG
Sbjct: 75  KSTLLSSMTSTHSEAAGYEFTTLTCIPGVISYNGANIQLLDLPGIIEGASQG 126



 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +1

Query: 214 MGILEKISEIEKEMREHRKIK 276
           MGILEKI+EIE E+   +K K
Sbjct: 1   MGILEKIAEIEHEISRTQKNK 21


>Z81134-8|CAB57908.1|  366|Caenorhabditis elegans Hypothetical
           protein T28D6.6 protein.
          Length = 366

 Score =  100 bits (240), Expect = 7e-22
 Identities = 54/112 (48%), Positives = 60/112 (53%)
 Frame = +3

Query: 255 ARTQKNKATEYHLGLLKAKLAKYRSQLLEPSKKGGDKGEGFDVLKSGDARVALIGFPSVG 434
           ARTQKNKAT  HLG+LKAKLAK R  L+ P   GG  GEGFDV K+GDAR+  +GFPSVG
Sbjct: 15  ARTQKNKATNAHLGILKAKLAKLRRDLITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVG 74

Query: 435 KXXXXXXXXXXXXEAASXXXXXXXXXXXXXNIAVPTYNC*DLPGIIEGAAQG 590
           K            E A+                       DLPGIIEGA  G
Sbjct: 75  KSTLLCNLAGVFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDG 126


>AL117202-33|CAB55097.1|  366|Caenorhabditis elegans Hypothetical
           protein T28D6.6 protein.
          Length = 366

 Score =  100 bits (240), Expect = 7e-22
 Identities = 54/112 (48%), Positives = 60/112 (53%)
 Frame = +3

Query: 255 ARTQKNKATEYHLGLLKAKLAKYRSQLLEPSKKGGDKGEGFDVLKSGDARVALIGFPSVG 434
           ARTQKNKAT  HLG+LKAKLAK R  L+ P   GG  GEGFDV K+GDAR+  +GFPSVG
Sbjct: 15  ARTQKNKATNAHLGILKAKLAKLRRDLITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVG 74

Query: 435 KXXXXXXXXXXXXEAASXXXXXXXXXXXXXNIAVPTYNC*DLPGIIEGAAQG 590
           K            E A+                       DLPGIIEGA  G
Sbjct: 75  KSTLLCNLAGVFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDG 126


>Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical protein
            C02B4.1 protein.
          Length = 1461

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -2

Query: 591  CPEQHLQ*FQANLNNCM 541
            CPEQH+Q  + NLN+C+
Sbjct: 1067 CPEQHIQTEECNLNSCL 1083


>Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical protein
            C02B4.1 protein.
          Length = 1461

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -2

Query: 591  CPEQHLQ*FQANLNNCM 541
            CPEQH+Q  + NLN+C+
Sbjct: 1067 CPEQHIQTEECNLNSCL 1083


>AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.
          Length = 1461

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -2

Query: 591  CPEQHLQ*FQANLNNCM 541
            CPEQH+Q  + NLN+C+
Sbjct: 1067 CPEQHIQTEECNLNSCL 1083


>AY077615-1|AAL79359.1|  510|Caenorhabditis elegans KSR-2b protein.
          Length = 510

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +1

Query: 160 HYQLIDCVVNSCQITRRIMGILEKISEIEKEMREHRKI 273
           H   +D V N C+IT + MG + + + I+K + + RK+
Sbjct: 130 HKGCLDRVKNDCKITTQYMGGILENAVIQKNVHKTRKL 167


>AL137227-5|CAB70240.2|  510|Caenorhabditis elegans Hypothetical
           protein F58D5.4b protein.
          Length = 510

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +1

Query: 160 HYQLIDCVVNSCQITRRIMGILEKISEIEKEMREHRKI 273
           H   +D V N C+IT + MG + + + I+K + + RK+
Sbjct: 130 HKGCLDRVKNDCKITTQYMGGILENAVIQKNVHKTRKL 167


>AF125451-5|AAD12824.1| 1086|Caenorhabditis elegans Taf
           (tbp-associated transcriptionfactor) family protein 2
           protein.
          Length = 1086

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -1

Query: 433 PTEGKPIKATRASPDFSTSK-PSPLSPP 353
           P EG P  A   +P  STS+ P PL PP
Sbjct: 24  PREGAPPPAPPLAPGASTSQAPPPLQPP 51


>AF077533-2|AAP40529.1|  972|Caenorhabditis elegans Hypothetical
           protein F54G2.1b protein.
          Length = 972

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 169 LIDCVVNSCQITRRIMGILEKISEIEKEMREHRKIKRLN 285
           L+   +N+C+  RR + I EK+   +  +   R   RLN
Sbjct: 759 LLCAAINNCEQVRRSLNITEKLHMDDMSLAYERDASRLN 797


>AF077533-1|AAZ91357.1| 1126|Caenorhabditis elegans Hypothetical
           protein F54G2.1a protein.
          Length = 1126

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 169 LIDCVVNSCQITRRIMGILEKISEIEKEMREHRKIKRLN 285
           L+   +N+C+  RR + I EK+   +  +   R   RLN
Sbjct: 743 LLCAAINNCEQVRRSLNITEKLHMDDMSLAYERDASRLN 781


>Z70208-8|CAA94143.1|  196|Caenorhabditis elegans Hypothetical
           protein F54B11.8 protein.
          Length = 196

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 22/65 (33%), Positives = 31/65 (47%)
 Frame = -1

Query: 379 SKPSPLSPPFFEGSSNCDLYFANLAFKRPK*YSVALFFCVLAFLSQFLIFSLISP*FGEL 200
           + PS L   F E +  C+ Y +N  F + K    A   C L     FLIF +I    G++
Sbjct: 121 TSPS-LYKDFLEDTLCCE-YLSN-TFLKLKLKIAASRTCFLIIFMLFLIFKIIVCTNGQI 177

Query: 199 SDNYL 185
           + NYL
Sbjct: 178 TSNYL 182


>U80444-2|AAB37788.1|  305|Caenorhabditis elegans Collagen protein
           58 protein.
          Length = 305

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 367 PLSPPFFEGSSNCDLYFANLAFKRPK 290
           P  PP F G   C+ ++ NL+   P+
Sbjct: 105 PPGPPGFNGEDGCNRFYCNLSHNLPQ 130


>U58754-6|AAK72081.1|  325|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 12 protein.
          Length = 325

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -2

Query: 381 HRNLHLCLHLFLKVPATVIYILLIWLLKDPSDIQSLYFSVF 259
           HR+  + L + + +P+   +I  IW   DP +I+ +    F
Sbjct: 124 HRHTLVILLMIIYIPSLFQWISFIWSQDDPEEIREILHVAF 164


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,074,810
Number of Sequences: 27780
Number of extensions: 233725
Number of successful extensions: 792
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)