Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20523
         (592 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    24   1.3  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    24   1.3  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   3.0  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   3.9  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   5.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.0  

>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 133 IHSINHFILKNYTDS*ILFNAYPKYNCVYYN 41
           IH+ N++   NY +     N Y  Y  +YYN
Sbjct: 90  IHNNNNYNNNNYNNYNYNNNNYNNYKKLYYN 120


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -1

Query: 322 YFANLAFKRPK*YSVALFFCVLAFLSQFLIFSLIS 218
           Y + LAF  P      +  C+   LSQ + F LIS
Sbjct: 251 YLSVLAFYLPADSGEKIALCINILLSQTMFFLLIS 285


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +1

Query: 226 EKISEIEKEMREHRKIK 276
           +KISE+EKEM   +K++
Sbjct: 283 KKISELEKEMLNGQKLQ 299


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 148 VAEKHYQLIDCVVNSCQITRRIM 216
           V ++H QLID + N   I  R+M
Sbjct: 361 VIDQHSQLIDTLENVLAIVDRLM 383


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 390 TLVHRNLHLCLHLFLKVPATVIYILLI 310
           TL+     +   LF  +P T+I +L I
Sbjct: 216 TLIEHAFEISTMLFFVLPMTIIIVLYI 242


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
 Frame = -1

Query: 211 FGELSDNYLPRSQLIDNVFRLLN*NRIHSINHF--ILKN--YTDS*ILFNAYPKYNCVYY 44
           F  + + Y+P  Q I+N+F+    +  +  N +   LKN  YT S  L      YNCV  
Sbjct: 644 FDIIQNIYIPEPQDIENIFKYGYVSHANQRNMYKLDLKNMKYTRSADL----SSYNCVPI 699

Query: 43  N 41
           N
Sbjct: 700 N 700


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,140
Number of Sequences: 438
Number of extensions: 2979
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)