Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20523
(592 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g17470.1 68414.m02143 developmentally regulated GTP-binding p... 108 3e-24
At1g72660.1 68414.m08403 developmentally regulated GTP-binding p... 107 7e-24
At4g39520.1 68417.m05588 GTP-binding protein, putative similar t... 103 9e-23
At2g01440.1 68415.m00067 ATP-dependent DNA helicase, putative 29 2.3
At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol p... 28 4.1
At4g31630.1 68417.m04493 transcriptional factor B3 family protei... 28 5.4
At4g31490.1 68417.m04473 coatomer beta subunit, putative / beta-... 28 5.4
At4g31480.1 68417.m04472 coatomer beta subunit, putative / beta-... 28 5.4
At1g67170.1 68414.m07641 expressed protein similar to enterophil... 28 5.4
At5g61600.1 68418.m07729 ethylene-responsive element-binding fam... 27 7.1
At5g24450.1 68418.m02882 transcription factor-related low simila... 27 7.1
At3g19250.1 68416.m02442 hypothetical protein 27 7.1
At5g58940.1 68418.m07383 protein kinase family protein contains ... 27 9.4
At4g27040.1 68417.m03888 expressed protein 27 9.4
>At1g17470.1 68414.m02143 developmentally regulated GTP-binding
protein (DRG1) identical to developmentally regulated
GTP binding protein (DRG1) [Arabidopsis thaliana]
GI:2345150
Length = 399
Score = 108 bits (259), Expect = 3e-24
Identities = 60/112 (53%), Positives = 66/112 (58%)
Frame = +3
Query: 255 ARTQKNKATEYHLGLLKAKLAKYRSQLLEPSKKGGDKGEGFDVLKSGDARVALIGFPSVG 434
ARTQKNKATEYHLG LKAK+AK R+QLLEP K GEGF+V K G RVALIGFPSVG
Sbjct: 15 ARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGASGGGEGFEVTKYGHGRVALIGFPSVG 74
Query: 435 KXXXXXXXXXXXXEAASXXXXXXXXXXXXXNIAVPTYNC*DLPGIIEGAAQG 590
K EAAS + DLPGIIEGA++G
Sbjct: 75 KSTLLTMLTGTHSEAASYEFTTLTCIPGVIHYNDTKIQLLDLPGIIEGASEG 126
>At1g72660.1 68414.m08403 developmentally regulated GTP-binding
protein, putative very strong similarity to
developmentally regulated GTP binding protein (DRG1)
[Arabidopsis thaliana] GI:2345150
Length = 399
Score = 107 bits (256), Expect = 7e-24
Identities = 59/112 (52%), Positives = 66/112 (58%)
Frame = +3
Query: 255 ARTQKNKATEYHLGLLKAKLAKYRSQLLEPSKKGGDKGEGFDVLKSGDARVALIGFPSVG 434
ARTQKNKATEYHLG LKAK+AK R+QLLEP K G+GF+V K G RVALIGFPSVG
Sbjct: 15 ARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGGGDGFEVTKYGHGRVALIGFPSVG 74
Query: 435 KXXXXXXXXXXXXEAASXXXXXXXXXXXXXNIAVPTYNC*DLPGIIEGAAQG 590
K EAAS + DLPGIIEGA++G
Sbjct: 75 KSTLLTMLTGTHSEAASYEFTTLTCIPGVIHYNDTKIQLLDLPGIIEGASEG 126
>At4g39520.1 68417.m05588 GTP-binding protein, putative similar to
SP|Q9Y295 Developmentally regulated GTP-binding protein
1 (DRG 1) {Homo sapiens}; contains Pfam profiles
PF02824: TGS domain, PF01018: GTP1/OBG family
Length = 369
Score = 103 bits (247), Expect = 9e-23
Identities = 59/114 (51%), Positives = 63/114 (55%), Gaps = 2/114 (1%)
Frame = +3
Query: 255 ARTQKNKATEYHLGLLKAKLAKYRSQLLEPSKK--GGDKGEGFDVLKSGDARVALIGFPS 428
A+TQKNKAT +HLGLLKAKLAK R LL P K GG GEGFDV KSGD+RV L+GFPS
Sbjct: 16 AKTQKNKATSHHLGLLKAKLAKLRRDLLAPPTKGGGGGAGEGFDVTKSGDSRVGLVGFPS 75
Query: 429 VGKXXXXXXXXXXXXEAASXXXXXXXXXXXXXNIAVPTYNC*DLPGIIEGAAQG 590
VGK E AS DLPGIIEGA G
Sbjct: 76 VGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDG 129
>At2g01440.1 68415.m00067 ATP-dependent DNA helicase, putative
Length = 953
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +3
Query: 273 KATEYHLGLLKAKLAKYRSQLLEPSKKGGDKGEGFDVLKSGDARVAL 413
+A L ++ K KY LL K DK E + +SG+ ++ L
Sbjct: 781 RAASAELEIVTKKFPKYNCGLLHGRMKSDDKEEALNKFRSGETQILL 827
>At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol
protease, putative similar to cysteine proteinase RD21A
precursor (thiol protease) GI:435619, SP:P43297 from
[Arabidopsis thaliana]
Length = 463
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -1
Query: 418 PIKATRASPDFSTSKPSPLSPPFFEGSSNCDLYFA 314
PIK + P+ S PSP+ PP + CD YF+
Sbjct: 352 PIKKGQNPPNPGPSPPSPIKPP-----TTCDKYFS 381
>At4g31630.1 68417.m04493 transcriptional factor B3 family protein
similar to reproductive meristem gene 1 from [Brassica
oleracea var. botrytis] GI:3170424, [Arabidopsis
thaliana] GI:13604227; contains Pfam profile PF02362: B3
DNA binding domain
Length = 512
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -1
Query: 457 RVDKRVDLPTEGKPIKATRASP-DFSTSKPSPLS 359
RV+KR + EG P ++TRA P + +P +S
Sbjct: 435 RVEKRAQVTEEGGPSRSTRADPGNLQQKQPCSIS 468
>At4g31490.1 68417.m04473 coatomer beta subunit, putative /
beta-coat protein, putative / beta-COP, putative similar
to Coatomer beta subunit (Beta-coat protein) (Beta-COP)
from {Rattus norvegicus} SP|P23514, {Mus musculus}
SP|Q9JIF7, {Homo sapiens} SP|P53618; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 948
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -2
Query: 447 KGLTYPQKESLSKQLEHHQTLVHRNLHLCLHLFLKVPATVIYILLIWL 304
K + Q L K E+ Q L+ +H C F +V +TV+++L+ +L
Sbjct: 358 KEVVKTQSGELEKNGEYRQMLIQA-IHACAVKFPEVASTVVHLLMDFL 404
>At4g31480.1 68417.m04472 coatomer beta subunit, putative /
beta-coat protein, putative / beta-COP, putative similar
to Coatomer beta subunit (Beta-coat protein) (Beta-COP)
from {Rattus norvegicus} SP|P23514, {Mus musculus}
SP|Q9JIF7, {Homo sapiens} SP|P53618; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 971
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -2
Query: 447 KGLTYPQKESLSKQLEHHQTLVHRNLHLCLHLFLKVPATVIYILLIWL 304
K + Q L K E+ Q L+ +H C F +V +TV+++L+ +L
Sbjct: 381 KEVVKTQSGELEKNGEYRQMLIQA-IHACAVKFPEVASTVVHLLMDFL 427
>At1g67170.1 68414.m07641 expressed protein similar to
enterophilin-2L (GI:12718845) [Cavia porcellus]; similar
to Hyaluronan mediated motility receptor (Intracellular
hyaluronic acid binding protein) (Receptor for
hyaluronan-mediated motility) (CD168 antigen)
(Swiss-Prot:O75330) [Homo sapiens]
Length = 359
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/44 (27%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = +1
Query: 151 AEKHYQLIDCVVNSCQITR--RIMGILEKISEIEKEMREHRKIK 276
A+ Q++ + S + R R+MG+ EK++++E E+++ +K
Sbjct: 93 AQHEIQMLHAQIGSMKSEREQRMMGLAEKVAKMETELQKSEAVK 136
>At5g61600.1 68418.m07729 ethylene-responsive element-binding family
protein contains similarity to ethylene responsive
element binding factor 5 (AtERF5) (Swiss-Prot:O80341)
[Arabidopsis thaliana]; contains Pfam PF00847: AP2
domain
Length = 241
Score = 27.5 bits (58), Expect = 7.1
Identities = 9/33 (27%), Positives = 21/33 (63%)
Frame = +3
Query: 258 RTQKNKATEYHLGLLKAKLAKYRSQLLEPSKKG 356
+T+K + ++ G+ + KY +++ +P+KKG
Sbjct: 78 KTEKEEEERHYRGVRRRPWGKYAAEIRDPNKKG 110
>At5g24450.1 68418.m02882 transcription factor-related low
similarity to transcription factor IIIC63 [Homo sapiens]
GI:5281316
Length = 545
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 433 VSQPFYRPSLTHIQKQQVMNSQR*HDTWSYRISRCQHT 546
+ + F R T IQK + SQR H + + +C++T
Sbjct: 414 IQEEFERSEKTRIQKDALQPSQRNHQETTKDMKKCKNT 451
>At3g19250.1 68416.m02442 hypothetical protein
Length = 398
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 440 NPFIDPHSHTFRSSKL*IHN-ADMIPGVIEYRGANIQLLRFA 562
NPF P SH+F+ ++L + AD + I + ++LL A
Sbjct: 204 NPFASPESHSFQDTQLCFYQLADKLDTRIRKSKSRVRLLHHA 245
>At5g58940.1 68418.m07383 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 466
Score = 27.1 bits (57), Expect = 9.4
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 148 VAEKHYQLIDCVVNSCQITRRIM-GILEKISEIEKEMRE 261
VAEK +L V + TR M GI EK+ I +EM+E
Sbjct: 388 VAEKMLRLASECVTPTRATRPAMKGIAEKLWAIRREMKE 426
>At4g27040.1 68417.m03888 expressed protein
Length = 250
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +1
Query: 148 VAEKHYQLIDCVVNSCQITRRIMGILEKISEIEKEMREHRKIKRLNIT 291
+ + +Y+L ++ C +TR G L + E+ +R+ RK R +T
Sbjct: 92 IGDFYYELGVQIIEVCMLTRSHNGGLISLQELCNHLRQRRKKDREAVT 139
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,085,693
Number of Sequences: 28952
Number of extensions: 204938
Number of successful extensions: 622
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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