Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20522
(637 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0992 - 33644712-33644726,33644769-33644822,33644915-336451... 65 5e-11
07_03_0685 - 20679883-20679927,20680034-20680087,20680179-206803... 64 1e-10
05_05_0359 + 24393254-24393260,24393952-24394163,24394243-243942... 63 2e-10
04_04_1237 - 31991817-31992569,31993452-31993550,31994343-319949... 62 4e-10
01_06_1413 + 37149038-37149295,37149392-37149603,37149687-371499... 29 4.1
02_04_0141 + 20162276-20162285,20162460-20162726,20162734-201628... 28 5.4
06_03_1192 + 28296093-28296748,28296819-28297092 27 9.4
06_03_0742 + 24027506-24027721,24028835-24029004,24029893-240300... 27 9.4
05_01_0072 - 486211-486254,486350-486524,486658-486852,487489-48... 27 9.4
01_07_0344 - 42869465-42869502,42869597-42869771,42869923-428701... 27 9.4
01_01_0461 - 3414127-3414867 27 9.4
>01_06_0992 -
33644712-33644726,33644769-33644822,33644915-33645126,
33645436-33645472
Length = 105
Score = 64.9 bits (151), Expect = 5e-11
Identities = 30/46 (65%), Positives = 33/46 (71%)
Frame = +1
Query: 241 GRRSSGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFAC 378
G S VHVRIQQRNGRK+LTTVQGL EY KI++ KKEF C
Sbjct: 26 GAGSKDYVHVRIQQRNGRKSLTTVQGLKKEYSYNKILKDLKKEFCC 71
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/33 (51%), Positives = 25/33 (75%)
Frame = +3
Query: 381 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLV 479
GTVV+ PE G+V+QLQGDQR+N+ +L + +
Sbjct: 73 GTVVQDPELGQVIQLQGDQRKNVATFLVQIAFI 105
>07_03_0685 -
20679883-20679927,20680034-20680087,20680179-20680390,
20680476-20680550,20683094-20683168,20686196-20686264,
20686349-20686502,20686577-20686654,20689102-20689194,
20689491-20689640,20690134-20690268,20691009-20691098,
20691412-20691453,20691796-20692053,20692131-20692207,
20693126-20693186,20693687-20693905,20694936-20695208,
20695314-20695505,20695841-20696011
Length = 840
Score = 63.7 bits (148), Expect = 1e-10
Identities = 25/43 (58%), Positives = 36/43 (83%)
Frame = +3
Query: 381 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 509
GTVV+ PE G+V+QLQGDQR+N+ +L ++G+VK E +K+HGF
Sbjct: 798 GTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 840
Score = 62.1 bits (144), Expect = 4e-10
Identities = 28/43 (65%), Positives = 32/43 (74%)
Frame = +1
Query: 250 SSGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFAC 378
S VHVRIQQRNGRK+LTTVQGL E+ KI++ KKEF C
Sbjct: 754 SKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCC 796
>05_05_0359 +
24393254-24393260,24393952-24394163,24394243-24394296,
24394400-24394444
Length = 105
Score = 63.3 bits (147), Expect = 2e-10
Identities = 29/46 (63%), Positives = 33/46 (71%)
Frame = +1
Query: 241 GRRSSGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFAC 378
G + VHVRIQQRNGRK+LTTVQGL EY KI++ KKEF C
Sbjct: 16 GPGAKDYVHVRIQQRNGRKSLTTVQGLKKEYSYNKILKDLKKEFCC 61
Score = 60.9 bits (141), Expect = 8e-10
Identities = 23/43 (53%), Positives = 35/43 (81%)
Frame = +3
Query: 381 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 509
GTVV+ PE G+V+QLQGDQR+N+ +L ++G+ K + +K+HGF
Sbjct: 63 GTVVQDPELGQVIQLQGDQRKNVATFLVQAGIAKKDNIKIHGF 105
>04_04_1237 -
31991817-31992569,31993452-31993550,31994343-31994976,
31995329-31995585
Length = 580
Score = 62.1 bits (144), Expect = 4e-10
Identities = 28/47 (59%), Positives = 35/47 (74%), Gaps = 1/47 (2%)
Frame = +1
Query: 241 GRRSSG-LVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFAC 378
GR + G VHVR+QQRNGRKTLTTVQG+ EY+ K++R K+E C
Sbjct: 490 GRGAGGDYVHVRVQQRNGRKTLTTVQGIGGEYNYAKVLRDLKRELCC 536
Score = 54.0 bits (124), Expect = 1e-07
Identities = 21/43 (48%), Positives = 32/43 (74%)
Frame = +3
Query: 381 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 509
G VVE E G+++QLQGD R ++ +L K+G+V+ + +KVHGF
Sbjct: 538 GNVVEDKELGKIIQLQGDHRNSVSDFLAKAGMVRKDNIKVHGF 580
>01_06_1413 +
37149038-37149295,37149392-37149603,37149687-37149951,
37150099-37150407
Length = 347
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 133 VVSQRFVETKRPYVQSYVHPESQHI 207
V +QR+V K P+V+ + HPE H+
Sbjct: 299 VEAQRYVAEKLPWVRYHEHPEGGHL 323
>02_04_0141 +
20162276-20162285,20162460-20162726,20162734-20162881,
20163025-20163091,20163878-20163955,20164034-20164039
Length = 191
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Frame = +1
Query: 229 QKLGGRRSSGL----VHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACKVR 387
+K GG ++ G+ VH+ ++ + RK ++ V+ S + +LKK + KK C +R
Sbjct: 133 RKRGGGQAKGVRAVVVHLEPKEFSFRKIVSVVEKKSKKRNLKKKKKKKKKNSGCPLR 189
>06_03_1192 + 28296093-28296748,28296819-28297092
Length = 309
Score = 27.5 bits (58), Expect = 9.4
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = +1
Query: 220 RCYQKLGGRRSSGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFAC---KVRS 390
R Y R S + + R+ + L +Y+ +++ RAC +EF C +V
Sbjct: 218 RGYTAASPGRMSAIFTAGVMARSRAEKGAETDVLVHDYE-REVERACSREFLCEENRVEE 276
Query: 391 WSTRSTA 411
STRS A
Sbjct: 277 TSTRSLA 283
>06_03_0742 +
24027506-24027721,24028835-24029004,24029893-24030052,
24030162-24030455,24031490-24031717,24031827-24032006,
24032079-24032238,24032591-24032617,24033426-24033613,
24034269-24034532,24035123-24035218,24035311-24035399,
24035473-24035620,24035842-24036051,24036141-24036440,
24037906-24038248,24038747-24038952,24039071-24039273,
24040021-24040117,24040148-24040222,24040328-24040602,
24041116-24041256,24041469-24042339,24042481-24042520,
24042605-24043050
Length = 1808
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2
Query: 228 IASANGSNVLRFWMDIRLNVGSL 160
IA++N VLR WMD++ NV L
Sbjct: 440 IAASNHMEVLRRWMDLQRNVNVL 462
>05_01_0072 -
486211-486254,486350-486524,486658-486852,487489-487599,
487693-487905,488432-488539,488621-488762,489157-490418,
490460-490480,490842-491228
Length = 885
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -1
Query: 208 ECVEILDGHTIERRVSLFQRNAAILRTQQYNC 113
+C+E + H I+ VS F +L T Y C
Sbjct: 676 KCIECIPQHAIQFIVSTFYGQVVMLSTHPYGC 707
>01_07_0344 -
42869465-42869502,42869597-42869771,42869923-42870117,
42870678-42870788,42870899-42871111,42871551-42871658,
42871732-42871873,42872150-42873449,42874032-42874085,
42874491-42874923
Length = 922
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -1
Query: 208 ECVEILDGHTIERRVSLFQRNAAILRTQQYNC 113
+C+E + H I+ VS F +L T Y C
Sbjct: 715 KCIECIPQHAIQFIVSTFYGQVVMLSTHPYGC 746
>01_01_0461 - 3414127-3414867
Length = 246
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 424 SCSTSPYSGCSTTVPCTRTPSCMPARSSSGH 332
S S S YS S + T++P+C RS GH
Sbjct: 141 SSSASFYSSYSLSFRSTQSPTCSSMRSLQGH 171
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,068,552
Number of Sequences: 37544
Number of extensions: 338401
Number of successful extensions: 934
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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