Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20522
         (637 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47415| Best HMM Match : No HMM Matches (HMM E-Value=.)              72   5e-13
SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)             29   4.2  
SB_2596| Best HMM Match : Extensin_2 (HMM E-Value=0.083)               28   5.5  
SB_38912| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_4667| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.3  
SB_58507| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_28710| Best HMM Match : Transposase_11 (HMM E-Value=4.9)            28   7.3  
SB_830| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   7.3  
SB_37825| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_47415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 584

 Score = 71.7 bits (168), Expect = 5e-13
 Identities = 30/40 (75%), Positives = 37/40 (92%)
 Frame = +1

Query: 259 LVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFAC 378
           ++HVRIQQRNGRKTLTT+QG+S EYD KK+V+A KK+FAC
Sbjct: 501 VIHVRIQQRNGRKTLTTIQGISDEYDKKKLVKAFKKQFAC 540



 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 31/65 (47%), Positives = 43/65 (66%), Gaps = 4/65 (6%)
 Frame = +3

Query: 327 GI*PEEDRAGMQEGVRVQ----GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQL 494
           GI  E D+  + +  + Q    GTVV+HPEYGE +QLQGDQR +  ++L +  L K +Q+
Sbjct: 520 GISDEYDKKKLVKAFKKQFACNGTVVDHPEYGECIQLQGDQRAHAQEFLLQIDLAKKDQI 579

Query: 495 KVHGF 509
           KVHGF
Sbjct: 580 KVHGF 584


>SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)
          Length = 812

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/56 (26%), Positives = 22/56 (39%)
 Frame = -1

Query: 478 TKPDLVSHWQIFSRWSP*SCSTSPYSGCSTTVPCTRTPSCMPARSSSGHIPRKGLA 311
           TKP   +     +  +  +  T P   C+   P +  PSC        H PRK +A
Sbjct: 644 TKPPTAAPTTAAATQAAPAAMTCPQPACAPQSPMSCMPSCPAYCCKRNHFPRKAMA 699


>SB_2596| Best HMM Match : Extensin_2 (HMM E-Value=0.083)
          Length = 896

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 358 CKKEFACKVRSWSTRSTARCCSFR 429
           C+K F C  RS++ R T+RCC  R
Sbjct: 503 CEKAFTCGHRSYNPR-TSRCCDGR 525


>SB_38912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 20/58 (34%), Positives = 26/58 (44%)
 Frame = -1

Query: 517 GGLKPCTLSCSGFTKPDLVSHWQIFSRWSP*SCSTSPYSGCSTTVPCTRTPSCMPARS 344
           GG +  T S S   K DL S + +F  W P     S     +++VP T  P C P  S
Sbjct: 83  GGKERRTKSRSSSLKDDL-SPFLVFGDWQP---RRSERIFINSSVPITNNPDCSPLAS 136


>SB_4667| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 317 PCTVVSVLRPFRCWIRTWTKPLE 249
           P + + +  P +CW R W KP E
Sbjct: 161 PRSRIPLKNPLKCWYRNWLKPGE 183


>SB_58507| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2353

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 237 RRTTFKWFSPRPYPATKRA*DAD 305
           RR T  W++ + YP  KRA D+D
Sbjct: 76  RRATDPWWTSKAYPIRKRARDSD 98


>SB_28710| Best HMM Match : Transposase_11 (HMM E-Value=4.9)
          Length = 302

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 3   FRLRVTFPFFSSHPPLRFGVNINWLFVSEHITARYQ*QLY 122
           +R R++F  F ++ P+RFG+ + W+         Y+ QLY
Sbjct: 4   WRGRLSFRQFIANKPVRFGIKV-WVLADSESKYVYRQQLY 42


>SB_830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1390

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -1

Query: 208  ECVEILDGHTIERRVSLFQRNAAILRTQQYNC 113
            +C+E +D H ++  +  FQ     L T  Y C
Sbjct: 1181 KCIECVDPHALQFIIDAFQGQVYALSTHPYGC 1212


>SB_37825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 884

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -2

Query: 228 IASANGSNVLRFWMDIRLNVGSLCFNETLRYYALNNITVTDNALL 94
           +A  +G      W D+     SL FN +L   AL ++TV D   L
Sbjct: 734 VAVLDGWGFGTIWCDVLAVTVSLSFNASLVTLALQSVTVNDTRAL 778


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,856,335
Number of Sequences: 59808
Number of extensions: 406891
Number of successful extensions: 2781
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2778
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)