Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20522
(637 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U02588-1|AAA18901.1| 110|Anopheles gambiae translation initiati... 96 9e-22
AJ441131-5|CAD29634.1| 574|Anopheles gambiae putative Na+ chann... 24 3.5
AJ439398-4|CAD28127.1| 572|Anopheles gambiae putative sodium ch... 24 3.5
DQ342048-1|ABC69940.1| 847|Anopheles gambiae STIP protein. 23 6.1
AY331408-1|AAQ97589.1| 100|Anopheles gambiae agCP14332 protein. 23 6.1
AY331407-1|AAQ97588.1| 101|Anopheles gambiae agCP14332 protein. 23 6.1
AY331406-1|AAQ97587.1| 96|Anopheles gambiae agCP14332 protein. 23 6.1
AY331405-1|AAQ97586.1| 96|Anopheles gambiae agCP14332 protein. 23 6.1
AY331404-1|AAQ97585.1| 100|Anopheles gambiae agCP14332 protein. 23 6.1
DQ139954-1|ABA29475.1| 451|Anopheles gambiae protein O-fucosylt... 23 8.1
>U02588-1|AAA18901.1| 110|Anopheles gambiae translation initiation
factor protein.
Length = 110
Score = 95.9 bits (228), Expect = 9e-22
Identities = 41/43 (95%), Positives = 42/43 (97%)
Frame = +3
Query: 381 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 509
GTV+EHPEYGEVLQLQGDQRENICQWLTKSGL KPEQLKVHGF
Sbjct: 68 GTVIEHPEYGEVLQLQGDQRENICQWLTKSGLAKPEQLKVHGF 110
Score = 87.0 bits (206), Expect = 4e-19
Identities = 39/41 (95%), Positives = 41/41 (100%)
Frame = +1
Query: 256 GLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFAC 378
GLVH+RIQQRNGRKTLTTVQGLS+EYDLKKIVRACKKEFAC
Sbjct: 26 GLVHIRIQQRNGRKTLTTVQGLSAEYDLKKIVRACKKEFAC 66
Score = 39.1 bits (87), Expect = 1e-04
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = +2
Query: 182 MSIQNLNTFDPFADAIK 232
MSIQNLNTFDPFADAIK
Sbjct: 1 MSIQNLNTFDPFADAIK 17
>AJ441131-5|CAD29634.1| 574|Anopheles gambiae putative Na+ channel
protein.
Length = 574
Score = 24.2 bits (50), Expect = 3.5
Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 10/55 (18%)
Frame = -1
Query: 367 PSCMPAR--SSSGHI------PRKGLA--P*SASYARFVAGYGRGLNHLNVVLRA 233
PS P SSSG P G A P +ASY RF+AG G + L +VL A
Sbjct: 228 PSIFPTEVGSSSGRFRPILWTPENGYAEEPSNASYPRFIAGPGVAMG-LAMVLDA 281
Score = 23.4 bits (48), Expect = 6.1
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -3
Query: 431 ALKLQHLAVLRVLHDRTLHANSFLHARTIFFRSYSEERPCT 309
A KL+HL R+ N+F RT R + +ER T
Sbjct: 528 ATKLKHLVHSRLQQANGWVRNTFRSRRTQLGRGFGQERTGT 568
>AJ439398-4|CAD28127.1| 572|Anopheles gambiae putative sodium
channel protein.
Length = 572
Score = 24.2 bits (50), Expect = 3.5
Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 10/55 (18%)
Frame = -1
Query: 367 PSCMPAR--SSSGHI------PRKGLA--P*SASYARFVAGYGRGLNHLNVVLRA 233
PS P SSSG P G A P +ASY RF+AG G + L +VL A
Sbjct: 228 PSIFPTEVGSSSGRFRPILWTPENGYAEEPSNASYPRFIAGPGVAMG-LAMVLDA 281
Score = 23.0 bits (47), Expect = 8.1
Identities = 13/43 (30%), Positives = 16/43 (37%)
Frame = +1
Query: 163 RPYVQSYVHPESQHIRPIRRCYQKLGGRRSSGLVHVRIQQRNG 291
RP H+ R K + LVH R+QQ NG
Sbjct: 502 RPTYADRYDANDYHLHAGRNAMVKEFAAKLKHLVHSRLQQANG 544
>DQ342048-1|ABC69940.1| 847|Anopheles gambiae STIP protein.
Length = 847
Score = 23.4 bits (48), Expect = 6.1
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = -3
Query: 290 PFRCWIRTWTKPL 252
P CWI WT+ L
Sbjct: 565 PIHCWIHPWTELL 577
>AY331408-1|AAQ97589.1| 100|Anopheles gambiae agCP14332 protein.
Length = 100
Score = 23.4 bits (48), Expect = 6.1
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 394 STTVPCTRTPSCMPARS 344
+TT PCTR PAR+
Sbjct: 6 TTTTPCTRRNRTAPARN 22
>AY331407-1|AAQ97588.1| 101|Anopheles gambiae agCP14332 protein.
Length = 101
Score = 23.4 bits (48), Expect = 6.1
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 394 STTVPCTRTPSCMPARS 344
+TT PCTR PAR+
Sbjct: 6 TTTTPCTRRNRTAPARN 22
>AY331406-1|AAQ97587.1| 96|Anopheles gambiae agCP14332 protein.
Length = 96
Score = 23.4 bits (48), Expect = 6.1
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 394 STTVPCTRTPSCMPARS 344
+TT PCTR PAR+
Sbjct: 6 TTTTPCTRRNRTAPARN 22
>AY331405-1|AAQ97586.1| 96|Anopheles gambiae agCP14332 protein.
Length = 96
Score = 23.4 bits (48), Expect = 6.1
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 394 STTVPCTRTPSCMPARS 344
+TT PCTR PAR+
Sbjct: 6 TTTTPCTRRNRTAPARN 22
>AY331404-1|AAQ97585.1| 100|Anopheles gambiae agCP14332 protein.
Length = 100
Score = 23.4 bits (48), Expect = 6.1
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 394 STTVPCTRTPSCMPARS 344
+TT PCTR PAR+
Sbjct: 6 TTTTPCTRRNRTAPARN 22
>DQ139954-1|ABA29475.1| 451|Anopheles gambiae protein
O-fucosyltransferase 2 protein.
Length = 451
Score = 23.0 bits (47), Expect = 8.1
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = -3
Query: 413 LAVLRVLHDRTLHANSFLHARTIFFRSY 330
LA +++H + H R IFF Y
Sbjct: 11 LAFSQIVHTTSAHLRELCEKRDIFFEPY 38
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 656,110
Number of Sequences: 2352
Number of extensions: 13018
Number of successful extensions: 34
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 62305095
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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