Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20522
         (637 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58762-4|AAK39303.1|  109|Caenorhabditis elegans Hypothetical pr...    63   1e-10
Z68004-2|CAA91982.1|  677|Caenorhabditis elegans Hypothetical pr...    31   0.91 
Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U97407-9|AAL02457.2| 1768|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z93392-1|CAB07687.2| 1737|Caenorhabditis elegans Hypothetical pr...    27   8.5  
Z83219-9|CAB05699.2| 1737|Caenorhabditis elegans Hypothetical pr...    27   8.5  
AL032648-9|CAB54460.1| 1737|Caenorhabditis elegans Hypothetical ...    27   8.5  
AC024756-9|AAK29883.4|  430|Caenorhabditis elegans Related to ye...    27   8.5  

>U58762-4|AAK39303.1|  109|Caenorhabditis elegans Hypothetical
           protein T27F7.3b protein.
          Length = 109

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 26/41 (63%), Positives = 35/41 (85%)
 Frame = +1

Query: 256 GLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFAC 378
           G+ H+RIQQR GRKT+TTVQG+ +EYDLK+IV+  KK+ +C
Sbjct: 25  GVCHIRIQQRTGRKTITTVQGIGTEYDLKRIVQYLKKKHSC 65



 Score = 61.3 bits (142), Expect = 6e-10
 Identities = 25/43 (58%), Positives = 32/43 (74%)
 Frame = +3

Query: 381 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 509
           GT+VEHPEYGEV+QL GDQR+ +  +L K G+V     +VHGF
Sbjct: 67  GTIVEHPEYGEVIQLTGDQRDKVKDFLIKVGIVNESNCRVHGF 109


>Z68004-2|CAA91982.1|  677|Caenorhabditis elegans Hypothetical
           protein F47B10.2 protein.
          Length = 677

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -3

Query: 515 RLKTVHLELFRLH*AGFGEPLA--NILSLVALKLQHLA 408
           +LK + L L R H  G+GEPLA      L+AL++  LA
Sbjct: 198 KLKKLQLNLIRSHATGYGEPLAPNRARMLLALRINILA 235


>Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical protein
            F54F3.1 protein.
          Length = 1584

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 430  P*SCSTSPYSGCSTTVPCTRTPSCMPARSSSG 335
            P S +++P  GC  T  C+    C+  RSS+G
Sbjct: 938  PGSSASAPELGCDVTRDCSEFADCVYERSSTG 969


>U97407-9|AAL02457.2| 1768|Caenorhabditis elegans Hypothetical protein
            C34G6.1 protein.
          Length = 1768

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -3

Query: 380  LHANSFLHARTIFFRSYSEERPCTVVSVLRPFRCWIRTWTKP 255
            L  +SF+ A T+F RS  E+RP  V  + +    +  + ++P
Sbjct: 1417 LDKDSFIQAITVFIRSLVEQRPAWVSPLAKTMEEYANSESEP 1458


>Z93392-1|CAB07687.2| 1737|Caenorhabditis elegans Hypothetical
           protein Y48E1A.1a protein.
          Length = 1737

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -3

Query: 407 VLRVLHDRTLHANSFLHARTIFFRSYSEERPCTVVSVLRPFRCW 276
           VL  + DR L+   F+H     F  YS+       ++L P R W
Sbjct: 678 VLLSVRDRFLNKEDFMHLVLASFAQYSKRIEIPPPTILYPKRLW 721


>Z83219-9|CAB05699.2| 1737|Caenorhabditis elegans Hypothetical
           protein Y48E1A.1a protein.
          Length = 1737

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -3

Query: 407 VLRVLHDRTLHANSFLHARTIFFRSYSEERPCTVVSVLRPFRCW 276
           VL  + DR L+   F+H     F  YS+       ++L P R W
Sbjct: 678 VLLSVRDRFLNKEDFMHLVLASFAQYSKRIEIPPPTILYPKRLW 721


>AL032648-9|CAB54460.1| 1737|Caenorhabditis elegans Hypothetical
           protein Y48E1A.1a protein.
          Length = 1737

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -3

Query: 407 VLRVLHDRTLHANSFLHARTIFFRSYSEERPCTVVSVLRPFRCW 276
           VL  + DR L+   F+H     F  YS+       ++L P R W
Sbjct: 678 VLLSVRDRFLNKEDFMHLVLASFAQYSKRIEIPPPTILYPKRLW 721


>AC024756-9|AAK29883.4|  430|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 4 protein.
          Length = 430

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +3

Query: 339 EEDRAGM-QEGVRVQGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVH 503
           EED AG   + +R+    +E+  +    + QGD++ N  +      L + EQ+K H
Sbjct: 18  EEDTAGRYDQALRLYDQAIEYFLHAIKYESQGDKQRNAIRDKVGQYLNRAEQIKTH 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,316,922
Number of Sequences: 27780
Number of extensions: 287167
Number of successful extensions: 808
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)