Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20522
         (637 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               24   1.1  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    24   1.4  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   3.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.6  

>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -2

Query: 108 DNALLCAR*QTANLC*LQNVMADETRKMEMSRG 10
           D+  LC + +  NL  + +++ DE+ +M   RG
Sbjct: 22  DDITLCLKQENLNLDDIDSLLEDESERMLRKRG 54


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +3

Query: 168 LRSIVCPSRISTHSTHSPMLSKARRTTFKWFSP 266
           + S++ P  ++   THS    +     +KW SP
Sbjct: 52  ISSLIIPGNVNMIRTHSTXPXEEDDGPYKWISP 84


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 235 AFDSIGEWVECVEILDGHTIER 170
           A  SI E+    E+L  HT+E+
Sbjct: 259 AMSSIAEFSVSTEVLQDHTLEK 280


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = -1

Query: 604 NTYFLIGFIITTRNLS*YNVECGHVMF*QGGLKPC 500
           N  F+IG  +T       +V   HVM   GG   C
Sbjct: 465 NGRFMIGQYVTVHGDVISHVNISHVMVEDGGEYSC 499


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = -1

Query: 604 NTYFLIGFIITTRNLS*YNVECGHVMF*QGGLKPC 500
           N  F+IG  +T       +V   HVM   GG   C
Sbjct: 465 NGRFMIGQYVTVHGDVISHVNISHVMVEDGGEYSC 499


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,590
Number of Sequences: 438
Number of extensions: 3454
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)