Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20522
(637 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g54290.1 68414.m06189 eukaryotic translation initiation facto... 62 2e-10
At5g54760.1 68418.m06820 eukaryotic translation initiation facto... 62 3e-10
At4g27130.1 68417.m03899 eukaryotic translation initiation facto... 62 3e-10
At5g54940.2 68418.m06843 eukaryotic translation initiation facto... 59 3e-09
At5g54940.1 68418.m06842 eukaryotic translation initiation facto... 59 3e-09
At1g27900.1 68414.m03419 RNA helicase, putative similar to SP|Q1... 30 1.1
At3g44920.1 68416.m04839 cation/hydrogen exchanger, putative (CH... 28 4.5
>At1g54290.1 68414.m06189 eukaryotic translation initiation factor
SUI1, putative similar to P|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 113
Score = 62.5 bits (145), Expect = 2e-10
Identities = 27/46 (58%), Positives = 33/46 (71%)
Frame = +1
Query: 241 GRRSSGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFAC 378
G + VH+R+QQRNGRK+LTTVQGL EY KI++ KKEF C
Sbjct: 24 GAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYSKILKDLKKEFCC 69
Score = 59.7 bits (138), Expect = 2e-09
Identities = 24/43 (55%), Positives = 35/43 (81%)
Frame = +3
Query: 381 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 509
GTVV+ E G+V+QLQGDQR+N+ +L ++GLVK + +K+HGF
Sbjct: 71 GTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113
>At5g54760.1 68418.m06820 eukaryotic translation initiation factor
SUI1, putative similar to SP|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 113
Score = 62.1 bits (144), Expect = 3e-10
Identities = 27/46 (58%), Positives = 33/46 (71%)
Frame = +1
Query: 241 GRRSSGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFAC 378
G + VH+R+QQRNGRK+LTTVQGL EY KI++ KKEF C
Sbjct: 24 GAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCC 69
Score = 59.7 bits (138), Expect = 2e-09
Identities = 24/43 (55%), Positives = 35/43 (81%)
Frame = +3
Query: 381 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 509
GTVV+ E G+V+QLQGDQR+N+ +L ++GLVK + +K+HGF
Sbjct: 71 GTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113
>At4g27130.1 68417.m03899 eukaryotic translation initiation factor
SUI1, putative similar to SP|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 113
Score = 62.1 bits (144), Expect = 3e-10
Identities = 27/46 (58%), Positives = 33/46 (71%)
Frame = +1
Query: 241 GRRSSGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFAC 378
G + VH+R+QQRNGRK+LTTVQGL EY KI++ KKEF C
Sbjct: 24 GAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCC 69
Score = 59.7 bits (138), Expect = 2e-09
Identities = 24/43 (55%), Positives = 35/43 (81%)
Frame = +3
Query: 381 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 509
GTVV+ E G+V+QLQGDQR+N+ +L ++GLVK + +K+HGF
Sbjct: 71 GTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113
>At5g54940.2 68418.m06843 eukaryotic translation initiation factor
SUI1, putative similar to SP|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 112
Score = 58.8 bits (136), Expect = 3e-09
Identities = 23/39 (58%), Positives = 32/39 (82%)
Frame = +1
Query: 262 VHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFAC 378
+H+RIQQRNG+K+LTTVQGL EY ++I++ KK+F C
Sbjct: 30 IHIRIQQRNGKKSLTTVQGLKKEYSYERILKDLKKDFCC 68
Score = 56.4 bits (130), Expect = 1e-08
Identities = 21/43 (48%), Positives = 34/43 (79%)
Frame = +3
Query: 381 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 509
G VV+ E G+++QLQGDQR+ + Q+L ++G+ K +Q+K+HGF
Sbjct: 70 GNVVQDKELGKIIQLQGDQRKKVSQFLVQTGIAKKDQIKIHGF 112
>At5g54940.1 68418.m06842 eukaryotic translation initiation factor
SUI1, putative similar to SP|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 112
Score = 58.8 bits (136), Expect = 3e-09
Identities = 23/39 (58%), Positives = 32/39 (82%)
Frame = +1
Query: 262 VHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFAC 378
+H+RIQQRNG+K+LTTVQGL EY ++I++ KK+F C
Sbjct: 30 IHIRIQQRNGKKSLTTVQGLKKEYSYERILKDLKKDFCC 68
Score = 56.4 bits (130), Expect = 1e-08
Identities = 21/43 (48%), Positives = 34/43 (79%)
Frame = +3
Query: 381 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 509
G VV+ E G+++QLQGDQR+ + Q+L ++G+ K +Q+K+HGF
Sbjct: 70 GNVVQDKELGKIIQLQGDQRKKVSQFLVQTGIAKKDQIKIHGF 112
>At1g27900.1 68414.m03419 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 700
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +1
Query: 109 SDSYIVECVVSQRFVETKRPYVQSYVHPESQHIRPIRRCYQKLGGRRSSG 258
+D + VV + T RP++++ + + PI+R +KL R+ SG
Sbjct: 604 NDGMMPNYVVYHELISTTRPFMRNVCAVDMAWVAPIKRKIEKLNVRKLSG 653
>At3g44920.1 68416.m04839 cation/hydrogen exchanger, putative
(CHX11) monovalent cation:proton antiporter family 2
(CPA2) member, PMID:11500563
Length = 671
Score = 28.3 bits (60), Expect = 4.5
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = -3
Query: 458 PLA-NILSLVALKLQHLAVLRVLHDRTL---HANSFLHARTIFFRSYSEE 321
P+A +L LV L Q ++ V HD+ L H NS++H + FR + +E
Sbjct: 383 PIAVTVLHLVKLVGQINPII-VSHDKKLKRLHKNSYIHTANLAFRQFMQE 431
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,479,414
Number of Sequences: 28952
Number of extensions: 266627
Number of successful extensions: 801
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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