Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20521
         (737 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    25   0.48 
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    25   0.84 
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    23   1.9  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    21   7.9  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    21   7.9  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          21   7.9  

>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = +1

Query: 334 VATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVY 486
           +  +  +D K E H+E+  A + E+R+  +   +G+  T   L    + VY
Sbjct: 172 IVGESVIDEKAEEHKEQFTALVREIRNAFRH--DGLLLTMSVLPNVNSSVY 220


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -1

Query: 335 TMKLFVCSLRMRDASSILAIF*AMAAIY*LPSYVSSL 225
           T+K++  + RM+D    +AI    AA+Y  P++ +S+
Sbjct: 114 TIKVWFQNRRMKDKRQRMAIAWPYAAVYTDPAFAASI 150


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = +2

Query: 50  AMEVETKSTEIRCQEMSKGGLAYEVILAEPVGVPVPRRADSP 175
           A    T  T+++  + S       V  A P G+P P  + SP
Sbjct: 194 ASRTTTSPTKVKASKASPAAAPRSV--ATPTGIPTPSTSASP 233



 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 177 SGESARRGTGTPTGSASITSYARPP 103
           S  +A R   TPTG  + ++ A PP
Sbjct: 210 SPAAAPRSVATPTGIPTPSTSASPP 234


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 15/51 (29%), Positives = 21/51 (41%)
 Frame = +1

Query: 334 VATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVY 486
           VA  + LD     H E+  + + ELR   K   E +  T   L    + VY
Sbjct: 180 VAGDKVLDENAAEHREQFVSLVRELRGAFK--AENLLVTLTVLPNVNSTVY 228


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = -3

Query: 699 VSLSAQLQ*ADVGRRPAAASPGWRSRAAGTS 607
           VSLS          RP  AS G R+R A TS
Sbjct: 64  VSLSENRSHEPEMERPKGASNGKRARTAYTS 94


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = -3

Query: 699 VSLSAQLQ*ADVGRRPAAASPGWRSRAAGTS 607
           VSLS          RP  AS G R+R A TS
Sbjct: 84  VSLSENRSHEPEMERPKGASNGKRARTAYTS 114


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,446
Number of Sequences: 336
Number of extensions: 1997
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19779950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)