Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20521
(737 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 36 0.005
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 32 0.074
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 30 0.30
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 30 0.40
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar... 29 0.69
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 28 1.2
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c... 28 1.6
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 27 2.8
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 2.8
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 2.8
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 27 3.7
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 26 4.9
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.9
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 26 4.9
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 25 8.5
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces... 25 8.5
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 25 8.5
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p... 25 8.5
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 36.3 bits (80), Expect = 0.005
Identities = 23/88 (26%), Positives = 44/88 (50%)
Frame = +3
Query: 459 PGTADRGSVQGHXXXXXXXXXXXXENLKKMIERLREHEEQVRKVRAGNQEKFQQLESAIQ 638
P T+D +V+ E K + ER R+HEE+++++ A N++ ++L +
Sbjct: 331 PTTSDSSNVESSEDVDPASLLQNEEFHKLIEERQRQHEERLKRINA-NKKALEELNQKKR 389
Query: 639 EKLQQAADRRLLIEAEQREKLRNHNIKL 722
E QQ + L+ + +E R+ N +L
Sbjct: 390 ELAQQQLKEQELLMQKIKETDRSGNKRL 417
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 32.3 bits (70), Expect = 0.074
Identities = 21/70 (30%), Positives = 33/70 (47%)
Frame = +1
Query: 304 IRSEQTNNFIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEV 483
+ SE+T + T E +E+ RE I LRS L D + VE + E + E+
Sbjct: 974 LASEKTLEMMNETHEQFKHLVESEISTREEKITSLRSELLDLNKRVEVLKEEKESSSKEL 1033
Query: 484 YKAIEDKMTQ 513
K +ED + +
Sbjct: 1034 AKQLEDAVRE 1043
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 30.3 bits (65), Expect = 0.30
Identities = 15/63 (23%), Positives = 34/63 (53%)
Frame = +3
Query: 540 KKMIERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQREKLRNHNIK 719
+K +++ R EE++R+ A ++ ++ + QEK + ++ + ++ EKL I+
Sbjct: 77 EKKLQKQRAQEERIRQKEAERLKREKERQQREQEKKLREQEKIAAKKMKELEKLEKERIR 136
Query: 720 LAE 728
L E
Sbjct: 137 LQE 139
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 29.9 bits (64), Expect = 0.40
Identities = 12/57 (21%), Positives = 31/57 (54%)
Frame = +1
Query: 319 TNNFIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYK 489
T N I++ + + + HEE + ELR++++++++ E+ ++ E+Y+
Sbjct: 85 TLNNILSMRTETGSMAKAHEEVSQQINTELRNKIREYIDQTEQQKVVAANAIEELYQ 141
>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 289
Score = 29.1 bits (62), Expect = 0.69
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +1
Query: 337 ATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQ--QTAEVYKAIEDKMT 510
A +E + ++E +EA +NE R L+ LEG ++ L++ Q + YK E + T
Sbjct: 5 AVRERRQFIYKRNQELQEAKLNEKRRALRKALEGNKELNKDLQEDSQLQKDYKYDESRAT 64
Query: 511 Q 513
Q
Sbjct: 65 Q 65
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 28.3 bits (60), Expect = 1.2
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +2
Query: 50 AMEVETKSTEIRCQEMSKGGLAYEVILAEPVGVPVPRRADSPEKTPSVEEIQE 208
A+ ETKST ++ GG A +A P +P P +P P+ E +++
Sbjct: 867 AITPETKST---VNQIMSGGEALAAPVAVPAPIPAPVAEPAPPAAPAKEVVEK 916
>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 570 EEQVRKVRAGNQEKFQQLESAIQEK 644
EE+ R ++A NQ +QLE AIQE+
Sbjct: 374 EEERRALKADNQTLQKQLEKAIQER 398
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/61 (21%), Positives = 34/61 (55%)
Frame = +3
Query: 537 LKKMIERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQREKLRNHNI 716
L+KM+E R EE+ +++R + + + E + E +++A ++ +++E+ + +
Sbjct: 250 LQKMLEEKRAREEEEQRIRE-EEARIAEEEKRLAE-VEEARKEEARLKKKEKERKKKEEM 307
Query: 717 K 719
K
Sbjct: 308 K 308
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 27.1 bits (57), Expect = 2.8
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +1
Query: 331 IVATKEALDAKMETHEEKREAYINELRSRLKDHLEG-VEKTRLTLEQQTAEVYKAIEDKM 507
++ + +A +A++E + I R +HL G ++K LE+Q ++A + +M
Sbjct: 1675 VLTSVQARNAELEDEVSRSVDKIRRRDDRC-EHLSGKLKKLHSQLEEQHETFFRAEQQRM 1733
Query: 508 TQL 516
TQL
Sbjct: 1734 TQL 1736
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +2
Query: 5 DAIQLFRSLCRLKVEAMEVETKSTEIRCQEMSKGGLAYE 121
D L+ L R + +E E ++ +C E K L YE
Sbjct: 2536 DEHDLYHGLWRRRANFLETEVATSHEQCHEWEKAQLVYE 2574
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 26.6 bits (56), Expect = 3.7
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +1
Query: 313 EQTNNFIVATKEA-LDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYK 489
+Q VA ++A +E K E + + + SR+K + +E TR L +Q ++ +
Sbjct: 460 KQVEELTVALNSGKMNAIVEAESSKNELWDSMMVSRMKTQEQSIELTR--LYKQLQDIEE 517
Query: 490 AIEDKMTQL 516
E+K+ ++
Sbjct: 518 DYENKLMRM 526
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 5 DAIQLFRSLCRLKVEAMEVETKSTEIRCQEM 97
DA +FRS+CRL V + K + IR Q M
Sbjct: 388 DAFLVFRSMCRLAVRQTSPD-KVSNIRSQAM 417
>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 433
Score = 26.2 bits (55), Expect = 4.9
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = +3
Query: 534 NLKKMIERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRL---LIEAEQREKLR 704
+L+ +E L + E +++ + + +E A QE LQQ R+ L E EQ +L+
Sbjct: 22 SLQMALEELNQQIEVIQRQEEQLALRKKAIEDARQEVLQQIQHRKFRQYLHEREQEARLQ 81
Query: 705 NHNIKLAEVR 734
+ ++ + R
Sbjct: 82 EYYLEQLQER 91
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +1
Query: 346 EALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQ 468
E L K+++ ++++ INEL R+K + V + T+++
Sbjct: 530 EGLTLKIDSITKEKDRLINELEQRIKSYEVNVSELNGTIDE 570
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 25.4 bits (53), Expect = 8.5
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Frame = +3
Query: 537 LKKMIERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIE-AEQREKLRNHN 713
+KK I+ + E+ + KV +E ++L+ I+E ++ +RR IE AEQR+ + NH
Sbjct: 423 IKKPID-MEEYSKVSGKVFRPVEEMEKELQK-IRENFEE--ERRRAIEVAEQRQLIVNHE 478
Query: 714 IK 719
++
Sbjct: 479 LE 480
>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 25.4 bits (53), Expect = 8.5
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = +3
Query: 531 ENLKKMIERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQREKL 701
E L K E +E + ++ +R +E ++ + A+Q+K+ Q A +R+KL
Sbjct: 27 ELLSKQREECKELQSKITNLRKQLKEGNKKQKRALQQKISQMEADLSQKHATERQKL 83
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 25.4 bits (53), Expect = 8.5
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 158 RRADSPEKTPSVEEIQEKLK 217
RRAD PE+TPS ++ L+
Sbjct: 21 RRADRPEETPSSSVYEQNLR 40
>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 464
Score = 25.4 bits (53), Expect = 8.5
Identities = 16/62 (25%), Positives = 26/62 (41%)
Frame = +1
Query: 310 SEQTNNFIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYK 489
SEQT A + + K E E L++ KD+ ++K LE++ + K
Sbjct: 391 SEQTQLVEEALTKVMKEKYREKENNLELLETNLKTHHKDYKHALKKRITALEEEKNRLIK 450
Query: 490 AI 495
I
Sbjct: 451 EI 452
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,185,516
Number of Sequences: 5004
Number of extensions: 33757
Number of successful extensions: 171
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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