Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20521
(737 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g38070.1 68417.m05377 bHLH family protein contains Pfam profi... 32 0.46
At1g79110.1 68414.m09224 expressed protein 31 0.60
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 30 1.8
At2g07190.1 68415.m00824 hypothetical protein 30 1.8
At1g80530.1 68414.m09439 nodulin family protein similar to nodul... 29 2.4
At4g24580.1 68417.m03522 pleckstrin homology (PH) domain-contain... 29 3.2
At3g25680.1 68416.m03196 expressed protein 29 3.2
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu... 29 3.2
At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding protei... 29 4.3
At1g67230.1 68414.m07652 expressed protein 29 4.3
At1g40133.1 68414.m04768 hypothetical protein 29 4.3
At5g16210.1 68418.m01894 HEAT repeat-containing protein contains... 28 5.6
At1g79110.2 68414.m09225 expressed protein 28 5.6
At1g64330.1 68414.m07290 myosin heavy chain-related similar to m... 28 5.6
At1g42960.1 68414.m04946 expressed protein 28 5.6
At5g61040.1 68418.m07660 expressed protein 27 9.8
At5g44180.1 68418.m05406 homeobox transcription factor, putative... 27 9.8
At5g08780.1 68418.m01041 histone H1/H5 family protein contains P... 27 9.8
At3g06020.1 68416.m00687 expressed protein ; expression supporte... 27 9.8
At2g31130.1 68415.m03801 expressed protein 27 9.8
At1g75720.1 68414.m08796 hypothetical protein 27 9.8
>At4g38070.1 68417.m05377 bHLH family protein contains Pfam profile:
PF00010 helix-loop-helix DNA-binding domain; PMID:
12679534; putative bHLH131 transcription factor
Length = 1513
Score = 31.9 bits (69), Expect = 0.46
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +3
Query: 537 LKKMIERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAAD 662
++K +ER +E E+ + + QEK ++ E+ +EKL Q D
Sbjct: 511 MQKEVERFKEMVEESSRFQTQMQEKMKEAENDYEEKLLQVCD 552
>At1g79110.1 68414.m09224 expressed protein
Length = 358
Score = 31.5 bits (68), Expect = 0.60
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +3
Query: 567 HEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQREKLRNHNIKLAE 728
H Q+ +V+ +EK ++ I E ++Q +RL ++ E+RE++ N L E
Sbjct: 163 HLYQMERVKYEIEEKRKRQARTIMEAIEQGLVKRLRVKEEERERIGKVNHALEE 216
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 339 HQGGARRQDGDPRGKTRGLHQRAALPSQGSS*G 437
HQGGA R + RG+ RG + + PS G G
Sbjct: 86 HQGGAGRDNDGDRGRDRGYDRDRSRPSGGRGGG 118
>At2g07190.1 68415.m00824 hypothetical protein
Length = 452
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +1
Query: 367 ETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAIEDKM 507
E +EE + +N + + DH K +L ++ TA + A+ DKM
Sbjct: 267 EGNEENHVSGMNRSKKKQSDHGAETRKKKLLCQRATATTHGALNDKM 313
>At1g80530.1 68414.m09439 nodulin family protein similar to
nodulin-like protein [Arabidopsis thaliana] GI:3329368,
nodule-specific protein Nlj70 [Lotus japonicus]
GI:3329366
Length = 561
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -1
Query: 575 FLMFAQTLDHLLEVLVTLVGSCVILSSMALYT 480
FL+FA +DH + V L+G C+ +++ T
Sbjct: 428 FLLFAMAIDHTIYVATALIGICMGFQFLSIAT 459
>At4g24580.1 68417.m03522 pleckstrin homology (PH) domain-containing
protein-related / RhoGAP domain-containing protein
contains Pfam domain, PF00620: RhoGAP domain
Length = 902
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 573 EQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIE 680
E+ +K G ++ +Q +QE+LQQ DR+L +E
Sbjct: 613 ERRKKALYGRRQALEQDVGRLQEQLQQERDRKLALE 648
>At3g25680.1 68416.m03196 expressed protein
Length = 558
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +3
Query: 534 NLKKMIERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAE 686
+L + I+ + + + V K Q++ S +Q KL+ D+R ++EAE
Sbjct: 470 SLTEEIDEMSQRLISDKSVYLTEHSKLQEMLSDLQSKLESLIDKRSILEAE 520
>At1g79280.1 68414.m09242 expressed protein weak similarity to
Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
Length = 2111
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +3
Query: 531 ENLKKMIERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAE 686
E L+ +E + H Q + + N+ +Q+ESA + +A R+ +EAE
Sbjct: 975 EKLRGEVESSKSHMLQYKSIAQVNETALKQMESAHENFRLEAEKRQRSLEAE 1026
>At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding
protein-related similar to matrix-localized MAR DNA
binding protein MFP1 GI:1771158 from [Lycopersicon
esculentum]
Length = 726
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 13/71 (18%)
Frame = +1
Query: 343 KEALDAKMETHEEKREAYINEL------RSRLKDHLEGV-------EKTRLTLEQQTAEV 483
KE + ++ ++K E +EL R R+KD LEGV +L+++ E+
Sbjct: 489 KERYERNLDAEKQKNEISASELALEKDLRRRVKDELEGVTHELKESSVKNQSLQKELVEI 548
Query: 484 YKAIEDKMTQL 516
YK +E +L
Sbjct: 549 YKKVETSNKEL 559
>At1g67230.1 68414.m07652 expressed protein
Length = 1132
Score = 28.7 bits (61), Expect = 4.3
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +1
Query: 331 IVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQ-TAEVYKAIEDK 504
+ ++ALD K+E H+EK N+ RLK + G EK + E+ E K +EDK
Sbjct: 392 VAKREQALDRKLEKHKEKE----NDFDLRLKG-ISGREKALKSEEKALETEKKKLLEDK 445
>At1g40133.1 68414.m04768 hypothetical protein
Length = 663
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 316 QTNNFIVATKEALDAKMETHEEKREAYINE 405
+ NN A +A AKME E +REA++N+
Sbjct: 474 EANNRDEALSQAAAAKMEKEEVEREAFVNK 503
>At5g16210.1 68418.m01894 HEAT repeat-containing protein contains
Pfam profile PF02985: HEAT repeat
Length = 1180
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Frame = +3
Query: 531 ENLKKMIERLREHEEQVRKVRAGNQEK---FQQLESAIQEKLQQAADRRLLIEAEQREKL 701
E+LKK IERL + ++ + K + +E+ F + ++Q+ L+ + ++ +
Sbjct: 223 ESLKKEIERLSKEKDGLLKSKENFEEQIGAFNKSTESLQKDLRDREKQVQSLKQSSEHQR 282
Query: 702 RNHNIKLAEVRS 737
RN N AE+ S
Sbjct: 283 RNLNDCRAEITS 294
>At1g79110.2 68414.m09225 expressed protein
Length = 355
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = +3
Query: 579 VRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQREKLRNHNIKLAE 728
+ +V+ +EK ++ I E ++Q +RL ++ E+RE++ N L E
Sbjct: 164 MERVKYEIEEKRKRQARTIMEAIEQGLVKRLRVKEEERERIGKVNHALEE 213
>At1g64330.1 68414.m07290 myosin heavy chain-related similar to
myosin heavy chain (GI:1850913) [Entamoeba histolytica];
similar to Intracellular protein transport protein USO1
(Swiss-Prot:P25386) [Saccharomyces cerevisiae]
Length = 555
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +1
Query: 340 TKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAIEDKMTQLP 519
T+ L+ K+E +++R+ EL S+ KDH +E+ L+ Q E +E + + P
Sbjct: 196 TESDLNQKLEDVKKERDGLEAELASKAKDHESTLEEVN-RLQGQKNETEAELEREKQEKP 254
>At1g42960.1 68414.m04946 expressed protein
Length = 168
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +1
Query: 385 REAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAIEDKMTQL 516
R+ + +L + D + +EKTR L ++ A++ AI+D +QL
Sbjct: 105 RKDLMRKLPKFIYDEEKALEKTRKVLAEKIAQLNSAIDDVSSQL 148
>At5g61040.1 68418.m07660 expressed protein
Length = 590
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 310 SEQTNNFIVATKEALDA-KMETHEEKREAYINELRSRLKDHLEGVEKTR 453
S ++F V +E LD +E EEK ++NE+ +L + VEKT+
Sbjct: 521 SHHKDDFKVQEQELLDLIGIEDEEEKSSDFVNEMEKQLIKQI--VEKTK 567
>At5g44180.1 68418.m05406 homeobox transcription factor, putative
similar to homeobox transcription factor Hox7/homeotic
protein Hox7 (GI:19486) {Lycopersicon peruvianum};
similar to GP|4165087| Williams-Beuren syndrome deletion
transcript 9 [Homo sapiens]; contains Pfam PF02791: DDT
domain and Pfam PF00046: Homeobox domain
Length = 1694
Score = 27.5 bits (58), Expect = 9.8
Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Frame = +3
Query: 537 LKKMIERLREHEEQVRK-VRAGNQEKFQQLESAIQEKLQQAADRRL---LIEAEQREK-L 701
L+K R+ EEQ+RK + ++E+ ++ E ++EK Q+ +R L + E ++REK L
Sbjct: 350 LEKQDMLRRKREEQIRKEMERQDRERRKEEERLLREK-QREEERYLKEQMRELQRREKFL 408
Query: 702 RNHNIKLAEVR 734
+ I+ ++R
Sbjct: 409 KKETIRAEKMR 419
>At5g08780.1 68418.m01041 histone H1/H5 family protein contains Pfam
domain, PF00538: linker histone H1 and H5 family
Length = 457
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 44 VEAMEVETKSTEIRCQEMSKGGLAYEV 124
VE ++VE E R + S+GG YEV
Sbjct: 229 VEVVDVENSENEARIEANSRGGELYEV 255
>At3g06020.1 68416.m00687 expressed protein ; expression supported
by MPSS
Length = 300
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/56 (25%), Positives = 34/56 (60%)
Frame = +3
Query: 531 ENLKKMIERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQREK 698
E ++ IE +R++EE++ + + +EK ++++ EK+Q++ R IE ++ +
Sbjct: 235 EEEEETIETVRDNEEEIPEYKEEEEEKEEEIKVKGVEKVQRS---RRCIEGDRENR 287
>At2g31130.1 68415.m03801 expressed protein
Length = 419
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +1
Query: 346 EALDAKMETHEEKREAYINELRSRLKDHLEG--VEKTRLTLEQQTAEVYKAIEDKM 507
E+ D + ET+ E + ++E +S + HL G VE++ + +++ E + DKM
Sbjct: 300 ESDDCRKETNVETSSSSVSEPKSEILQHLSGRSVEESCILVDRD--EFHSVFPDKM 353
>At1g75720.1 68414.m08796 hypothetical protein
Length = 197
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/69 (26%), Positives = 30/69 (43%)
Frame = +2
Query: 5 DAIQLFRSLCRLKVEAMEVETKSTEIRCQEMSKGGLAYEVILAEPVGVPVPRRADSPEKT 184
++IQ+ SL LK E + + ++R E + V VPR D P ++
Sbjct: 75 ESIQMRNSLSCLKEELERTKQELQKLRVDPGVNETKLDETVFKTKFEVLVPRVDDEPIRS 134
Query: 185 PSVEEIQEK 211
P + + EK
Sbjct: 135 PRLRSMSEK 143
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,994,695
Number of Sequences: 28952
Number of extensions: 200721
Number of successful extensions: 926
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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