Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20520
(500 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0510 + 24420402-24422582 31 0.52
02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,278... 31 0.69
07_01_0733 + 5570084-5570282,5570395-5570600,5572484-5572624,557... 30 0.91
05_03_0368 - 13127536-13128429 29 2.8
01_06_0542 + 30096277-30096340,30096444-30096529,30096810-300969... 28 3.7
03_03_0204 + 15436660-15437244,15437355-15437632,15438792-154390... 28 4.8
04_04_0036 - 22307328-22308026 27 8.5
03_05_1160 + 30826972-30828375,30828641-30828754,30828901-308290... 27 8.5
>11_06_0510 + 24420402-24422582
Length = 726
Score = 31.1 bits (67), Expect = 0.52
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -3
Query: 159 D*CFLCSRPSDRSGPGCVSTDRNVRSKC-RCSNVSCSSHYDAQ 34
D CF + P+D+ GC S + SKC RC S S + DA+
Sbjct: 504 DLCFYANHPADKDDDGCCSCSSS--SKCLRCLCSSSSGYPDAE 544
>02_01_0385 +
2783387-2783695,2784149-2785082,2785206-2785309,
2785402-2785486,2785517-2787578,2787732-2787753,
2788157-2788327,2791473-2791517,2792558-2793874,
2793962-2794012,2794090-2794188,2794352-2794504,
2794554-2794571
Length = 1789
Score = 30.7 bits (66), Expect = 0.69
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -1
Query: 428 TTKIHIHEKLYAHAKHNARAREVRRDYENF 339
T K+H+H+ ++ A+H A R +RD NF
Sbjct: 460 TLKLHMHDMVHELARHVAENRNTKRDNLNF 489
>07_01_0733 +
5570084-5570282,5570395-5570600,5572484-5572624,
5572773-5572949,5573049-5573145,5573575-5573687,
5573774-5573896,5574004-5574075,5575340-5575432,
5575564-5575674,5575767-5575889,5576834-5576890,
5576939-5577022,5577140-5577214,5577418-5577554,
5577719-5577853,5579029-5579168,5579334-5579399,
5579732-5579838,5579910-5579990,5580064-5580138,
5580224-5580325,5581837-5582005,5582090-5582217,
5582596-5582679,5582779-5582879,5583729-5583882,
5583964-5584038,5584112-5584262,5584463-5585078,
5585427-5585487,5585874-5586019,5586104-5586287,
5586363-5586440,5586603-5586931,5587023-5587199,
5587571-5587667,5587742-5587897,5587962-5588198,
5588271-5588354,5588426-5588486,5588762-5588898
Length = 1912
Score = 30.3 bits (65), Expect = 0.91
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = +3
Query: 30 LTARHS-VNCRTHLNIDISNAHCGPWRHIQDHSCLRAGC-IKNINHIAWLVPRS*SVALT 203
L+A+ S +NC + + +IS H G H + + AGC ++ + H+ P+ A+
Sbjct: 725 LSAKQSLINCASDIPSEISQMHAGSVFHGYVCNIIEAGCFVRFLGHLTGFSPK--DKAVD 782
Query: 204 RSALRVRTRRYV 239
RS ++ YV
Sbjct: 783 RSVEKLSNAFYV 794
>05_03_0368 - 13127536-13128429
Length = 297
Score = 28.7 bits (61), Expect = 2.8
Identities = 15/63 (23%), Positives = 26/63 (41%)
Frame = -1
Query: 467 RLIQRQQQNNETKTTKIHIHEKLYAHAKHNARAREVRRDYENFEITIKHF*IRRRDELAK 288
R + + + K K H K + R+R RR Y++ H +RRR +
Sbjct: 231 RSCEEDSETDSDKKIKRRHHRKSSKEERERGRSRHRRRSYDDDSSDDDHHTLRRRRRRRR 290
Query: 287 RDS 279
+D+
Sbjct: 291 KDA 293
>01_06_0542 +
30096277-30096340,30096444-30096529,30096810-30096934,
30097405-30097513,30097865-30097981,30098066-30098149,
30098795-30098914,30099416-30099502,30100160-30100237
Length = 289
Score = 28.3 bits (60), Expect = 3.7
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +3
Query: 108 HIQDHSCLRAGCIKNINHIAWLVPRS*SVALTRSALR 218
HI S L G + N+N IA VPR VA R+ LR
Sbjct: 183 HIGSFSFLGGGSVFNLNQIAQDVPRYMMVAGDRAELR 219
>03_03_0204 +
15436660-15437244,15437355-15437632,15438792-15439068,
15439160-15439405,15440853-15441134
Length = 555
Score = 27.9 bits (59), Expect = 4.8
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -2
Query: 475 LNND*YNVNNRITKPRRQKFIYTRSSTRTLNITRA 371
+N D +N +RI P+R Y +S+ TLN+ RA
Sbjct: 227 INGDAFNEKSRIPDPQRMVRAYAQSAA-TLNLLRA 260
>04_04_0036 - 22307328-22308026
Length = 232
Score = 27.1 bits (57), Expect = 8.5
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Frame = -3
Query: 138 RPSDRSGPGCVSTDRNVR--SKCRCSNVSCSSHYD 40
RP R G + +R V+ CRC+ C HYD
Sbjct: 113 RPLPRHGTTETAAERQVQRGGPCRCACNYCGGHYD 147
>03_05_1160 +
30826972-30828375,30828641-30828754,30828901-30829032,
30830087-30830224
Length = 595
Score = 27.1 bits (57), Expect = 8.5
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -3
Query: 147 LCSRPSDRSGPGCVSTDRNVRSKCRCSNVS--CSSHYDAQLTA 25
+C P + S G ++ D + S+C CS S S+H DA A
Sbjct: 347 MCPEPDNGSLDGRLTEDPPLSSRCDCSKQSEKKSAHLDANCCA 389
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,246,907
Number of Sequences: 37544
Number of extensions: 200953
Number of successful extensions: 565
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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