Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20518
         (407 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    64   1e-11
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    30   0.16 
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    27   1.5  
SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr 3|||M...    26   2.0  
SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces pom...    26   2.0  
SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1 |Schizosa...    26   2.6  
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy...    25   3.4  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    25   3.4  
SPAC4G9.06c |||histone chaperone Chz1 |Schizosaccharomyces pombe...    25   6.0  
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha...    25   6.0  
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    24   7.9  
SPAC1F7.08 |fio1||iron transport multicopper oxidase Fio1|Schizo...    24   7.9  
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po...    24   7.9  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    24   7.9  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    24   7.9  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    24   7.9  

>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 63.7 bits (148), Expect = 1e-11
 Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 5/57 (8%)
 Frame = +2

Query: 251 GHEAVSLDVVFPDADHVYGIPEHTDGLALKTTTSGD-----PYRLYNLDVFAYILDS 406
           G E+V LD+ F D  +VYG+PEHT  L+LK T + D     PYRLYN+D+F Y +DS
Sbjct: 230 GPESVGLDIKFVDYGNVYGVPEHTSSLSLKETNNSDAGYTEPYRLYNVDLFEYEVDS 286



 Score = 50.4 bits (115), Expect = 1e-07
 Identities = 28/73 (38%), Positives = 41/73 (56%)
 Frame = +3

Query: 36  VIITSEPLKLEFLDQNGEIAVVLNENSQLLVEPLRARREKVEDEDGDGANQLDDEEGTWS 215
           VI+T  P K+EF  ++GE  VVLNE   L +E  R +  +  +++ +G          W 
Sbjct: 168 VIVTFSPFKVEF-QRDGEPQVVLNERHLLNMEYYRPKSSRTPEQEANGM---------WD 217

Query: 216 ETFQSHHDSKPRG 254
           ETF + HDSKP+G
Sbjct: 218 ETFDNFHDSKPKG 230


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 29.9 bits (64), Expect = 0.16
 Identities = 17/51 (33%), Positives = 30/51 (58%)
 Frame = +3

Query: 159 EDEDGDGANQLDDEEGTWSETFQSHHDSKPRGTKQFRSTLSSLMRITSTVY 311
           ED+D +  ++ D EE + SE  +S +D KP+   Q   T +SL+ +  ++Y
Sbjct: 370 EDDDENEEDEEDSEETSESEEDESVNDEKPQVIDQ---TNASLVNLRKSIY 417


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +3

Query: 18  NTQGHKVIITSEPLKLEFLDQNGEIAVVLNENSQLLV---EPLRARRE 152
           NTQ   V +TSE   L+F  QN   ++ + +  Q+LV   E LR  R+
Sbjct: 97  NTQSSIVQMTSEIKNLDFAKQNLATSMTMLKRLQMLVTAYEKLRTLRQ 144


>SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 388

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 19/83 (22%), Positives = 39/83 (46%)
 Frame = +3

Query: 48  SEPLKLEFLDQNGEIAVVLNENSQLLVEPLRARREKVEDEDGDGANQLDDEEGTWSETFQ 227
           +E +K++        A+    +SQ+    ++   ++ + E     NQL  +    + T  
Sbjct: 81  AEFIKIDECTTGRVYALKFKSSSQIHFYWMQEYSDEKDKETASLINQLIADPVNTTRTIN 140

Query: 228 SHHDSKPRGTKQFRSTLSSLMRI 296
           SH++S  RGT    S+ S L+++
Sbjct: 141 SHNNSSSRGTDD--SSTSQLLQL 161


>SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 336

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
 Frame = +3

Query: 60  KLEFLDQNGEIAVVLNENSQLLVEPLRARREKVED-EDGDGANQLDDEEGTWSETFQSHH 236
           K+E L   G +  +L E     V  L   R  +ED ++GD +N  D    +  ++ ++H 
Sbjct: 162 KIEKLGSEGIVGYMLEEWDN-FVSMLEDARSDLEDYKEGDDSNWDDFGSESEDDSKEAHS 220

Query: 237 DSKPRGTKQFRSTLSSLMRITS 302
           +   R  +Q +   S L ++ +
Sbjct: 221 EEVFRSEEQIQLANSLLQKLNA 242


>SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 396

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +2

Query: 233 SRLQTSGHEAVSLDVVFPDADHVYGIPEHTDGLALKTTTSGDPY 364
           S+LQ    E  ++ ++ P   + + +P H D   L   TS DP+
Sbjct: 111 SQLQDFDEENEAVHMIVPKDTYEFEVPYHADIPKLIWQTSKDPF 154


>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 386

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = +3

Query: 144 RREKVEDEDGDGANQLDDEEGTWSETFQSHHDSKPRGTKQFRSTLSSLMRITSTVY 311
           ++  V   DGD +++ + EE        S   SK +  ++ R+ LSS+   +S ++
Sbjct: 238 KQPDVASSDGDFSDEPESEERDEVPELVSSSKSKSKTKRKARTALSSVSMSSSALF 293


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 129 EPLRARREKVEDEDGDGANQLDDEEGTWSETFQSHHDSK 245
           E   A  E+ EDE+ D  ++ D++E       ++ HD +
Sbjct: 105 EEADANEEEEEDEEDDEEDEEDEDESGGGRRKRARHDRR 143


>SPAC4G9.06c |||histone chaperone Chz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 113

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 9/42 (21%), Positives = 20/42 (47%)
 Frame = +3

Query: 123 LVEPLRARREKVEDEDGDGANQLDDEEGTWSETFQSHHDSKP 248
           L+  +    + V+ +D   + + DD + +  E +   HD +P
Sbjct: 20  LIPDIDDEEDDVDFQDLSSSGESDDSDDSMQEDYDDIHDEEP 61


>SPBC887.10 |mcs4||two-component response regulator
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 522

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 163 TKTVMGLISWMMRKELGVRPSSPITTPNLGARSSFA 270
           T+  +G  S  +   +G  P + +T+P +GA++ FA
Sbjct: 317 TQAHLGFPSNQIDGIVGTSPVNVLTSPGIGAKAPFA 352


>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 168 DGDGANQLDDEEGTWSETFQSHHD 239
           DG G + L D  G+W+++  ++ D
Sbjct: 94  DGTGLSDLTDPPGSWTDSLLANMD 117


>SPAC1F7.08 |fio1||iron transport multicopper oxidase
           Fio1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 622

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +3

Query: 54  PLKLEFLDQNGEIAVVLNENSQLLVEPLRARREKVEDED 170
           P+  E LD+N ++     EN+ + ++  +A  + VE +D
Sbjct: 581 PVPTEELDENDDLQEAALENAAMFLDTDKAVEKVVEGKD 619


>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +3

Query: 63  LEFLDQNGEIAVVLNENSQLLVEPLRARREKVEDEDGDGANQLDDEE 203
           +E+LD+  ++ V L E +  +    R     VE  +   AN+  D +
Sbjct: 61  IEYLDRAEKLKVYLQEKNNQISSKSRVSNGNVEGSNSPTANEALDSD 107


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
 Frame = +3

Query: 15  VNTQGHKVIITSEPLKLEFLDQNGEIAV----VLNENSQLLVE 131
           +  QG   ++ S+P KL FL+Q  +  +    ++ ++ QL +E
Sbjct: 501 IQLQGKIRVVPSKPFKLNFLEQIRDNVINLRKMVEQDEQLCIE 543


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = -1

Query: 107 VENDCYFSILVQEFEFERFGCY--DDFMPLRVDENHF 3
           VEN C F     +F    +G Y  + F    VDE +F
Sbjct: 317 VENTCVFLYKAMDFFVREYGSYPFNSFKLCFVDETNF 353


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -1

Query: 215  TPSSFLIIQLISPIT 171
            T +SFLI+Q +SP+T
Sbjct: 985  TENSFLILQAVSPLT 999


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,558,792
Number of Sequences: 5004
Number of extensions: 28142
Number of successful extensions: 120
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)