Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20518
         (407 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13633| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0)              79   1e-15
SB_20018| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.4  
SB_35301| Best HMM Match : ABC_tran (HMM E-Value=0)                    28   3.4  
SB_5939| Best HMM Match : BAH (HMM E-Value=7.9e-18)                    28   3.4  
SB_7681| Best HMM Match : Annexin (HMM E-Value=0)                      28   3.4  
SB_25730| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.5  
SB_48237| Best HMM Match : zf-P11 (HMM E-Value=6.5)                    27   4.5  
SB_15300| Best HMM Match : HemolysinCabind (HMM E-Value=8.9)           27   4.5  
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   4.5  
SB_6762| Best HMM Match : SNF (HMM E-Value=0)                          27   4.5  
SB_51335| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_50960| Best HMM Match : Pkinase (HMM E-Value=0)                     27   5.9  
SB_13524| Best HMM Match : K_tetra (HMM E-Value=3.7e-18)               27   5.9  
SB_55826| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  
SB_45954| Best HMM Match : VWA (HMM E-Value=4e-26)                     27   7.8  
SB_31182| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  
SB_8887| Best HMM Match : G-patch (HMM E-Value=1.2e-08)                27   7.8  
SB_51541| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  
SB_13995| Best HMM Match : ASC (HMM E-Value=0.0034)                    27   7.8  

>SB_13633| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0)
          Length = 663

 Score = 79.0 bits (186), Expect = 1e-15
 Identities = 34/52 (65%), Positives = 39/52 (75%)
 Frame = +2

Query: 251 GHEAVSLDVVFPDADHVYGIPEHTDGLALKTTTSGDPYRLYNLDVFAYILDS 406
           G  +V LD+ FP  +HVYGIPEH D LALK+T   +PYRLYNLDVF Y LDS
Sbjct: 243 GPSSVGLDISFPGVEHVYGIPEHADSLALKSTIGSEPYRLYNLDVFEYELDS 294



 Score = 43.2 bits (97), Expect = 8e-05
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 26/103 (25%)
 Frame = +3

Query: 24  QGHKVIITSEPLKLEFLDQNGEIAVVLNENSQLLVEPLRARR--EKVEDE---------- 167
           +   +I+T +P +L+FL  N E+ V +N    L  E  RA++  E  ++E          
Sbjct: 142 ENSNIIVTYKPFRLDFLVGN-EVVVSINTRGLLNFEHYRAKKVGEPPKEEPLQPAPPGPP 200

Query: 168 --DGDGANQ---------LDDE---EGTWSETFQSHHDSKPRG 254
             +GD  N+         ++DE   EG W E F+ HHDSKPRG
Sbjct: 201 SIEGDEPNEEQKQEEEKVVEDEKHEEGMWEENFKEHHDSKPRG 243


>SB_20018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 271

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = +3

Query: 63  LEFLDQNGEIAVVLNENSQLLVEPLRARREKVEDEDGDGANQLD--DEEGTWSETFQSHH 236
           LE +D++GE+ V   E  + + +  R    ++EDE  D  N  D  D + T +E      
Sbjct: 28  LEDIDEDGEVKVKTKEKKKTVTKKKRKGGIQLEDEVDDDDNDDDEVDLDATTAEELAKKK 87

Query: 237 DSKPRGTKQ 263
             K    K+
Sbjct: 88  KEKEEAEKK 96


>SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1649

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 296 HVYGIPEHTDGLALKTTTSGDPYRLYNLDVFAYI 397
           HV GI   +DG  L + +     R++NL+ FA++
Sbjct: 834 HVRGIAITSDGRRLVSASQDRTLRIWNLETFAHV 867


>SB_35301| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 618

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
 Frame = +3

Query: 108 ENSQLLVEPLRARREKVEDED-----GDGANQLDDEEGTWSETFQSHHDSKPRG 254
           E++ +  +  + R + VE ED     GD     + + G +++T    HDSK RG
Sbjct: 430 ESNDVECKDSKERNDDVECEDSEKGRGDSEESYNAQGGFFTQTSDGKHDSKQRG 483


>SB_5939| Best HMM Match : BAH (HMM E-Value=7.9e-18)
          Length = 1086

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +3

Query: 15  VNTQGHKVIITSEPLKLEFLDQNGEIAVVLNENSQLLVEPLRARREKVEDEDGD 176
           + T G+K  I S P+K   LDQN   +    +N++   +P    R  ++ E+GD
Sbjct: 1   MKTSGYKFEIDSSPVKDCMLDQNMNSSAEDKKNNETCNKP---HRRSLKAENGD 51


>SB_7681| Best HMM Match : Annexin (HMM E-Value=0)
          Length = 426

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +3

Query: 108 ENSQLLVEPLRARREKVEDEDGDGANQLDDEEGTWSETFQSHHDSKPRG 254
           E++    +P+   RE+ E+ D  G +  ++E G      + HH+ + RG
Sbjct: 282 EDALKRAQPIENGRERKEEADPPGQHHEEEERGVHPP--EQHHEEEERG 328


>SB_25730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 303

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
 Frame = +3

Query: 87  EIAVVLNENSQLLVEPLRARREKVEDEDG---DGANQLDDEEGTWSETFQSHHDSKPRGT 257
           E+   L E  +  +  L+  + ++ED      DG  +L  ++ T++     HH    R T
Sbjct: 40  EVTAKLLEAEKKKLTQLQLFQSELEDGKNASIDGTKELQQQKSTYARLSAQHH----RLT 95

Query: 258 KQFRSTLSSLMRITS 302
           K++      L+R TS
Sbjct: 96  KEYEEAARGLLRRTS 110


>SB_48237| Best HMM Match : zf-P11 (HMM E-Value=6.5)
          Length = 173

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 135 LRARREKVEDEDGDGANQLDDEE 203
           +RAR+++ EDED DG +  D E+
Sbjct: 54  VRARKKEYEDEDEDGDDDDDSED 76


>SB_15300| Best HMM Match : HemolysinCabind (HMM E-Value=8.9)
          Length = 159

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +3

Query: 87  EIAVVLNENSQLLVEPLRARREKVEDEDGDGANQLDDEEGTWSET 221
           +IA+ +   ++ +     +  ++V+ +DGD    LDD E ++ ET
Sbjct: 102 KIAIDVEAEAKAIENGTESGDDEVQGDDGDDIMALDDREYSYEET 146


>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1309

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
 Frame = +3

Query: 135  LRARREKVEDEDGD---GAN-QLDDEEGTWSETFQ-SHHDSKPRGTKQFRS 272
            L   R +++D+D D   G N + DD +G+   +F  SHH +K   T  F S
Sbjct: 1157 LAVDRVEIDDQDDDSDEGDNLKYDDNKGSCGSSFNDSHHAAKDPRTSTFPS 1207


>SB_6762| Best HMM Match : SNF (HMM E-Value=0)
          Length = 507

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 96  VVLNENSQLLVEPLRARREKVEDEDGDGANQLDDEEGTWSE 218
           V+ N + ++L+ P R      E E  +   QL+DE  TW +
Sbjct: 7   VLKNNSERVLLSPERENGSPQESELDEREVQLEDERETWGK 47


>SB_51335| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 576

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 10/92 (10%)
 Frame = +3

Query: 54  PLKLEFLDQNGEIAVVLNENSQLLVEPLRARREKVEDE---DGDGANQLDDE----EGTW 212
           P K E  DQ+ +  +V NE+ +   + ++   +   DE   D D  N  DD+    +   
Sbjct: 238 PKKSEESDQSDDSGIV-NESIKQKAKEVKKDEKDSNDEAEDDSDDDNSEDDQPLDSKPES 296

Query: 213 SETFQSHHDSKPRGTKQFRSTL---SSLMRIT 299
            E    HHD K +  K  + ++   SS  RIT
Sbjct: 297 QEEKAGHHDKKMKQKKSLKHSVSIESSYRRIT 328


>SB_50960| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 632

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 12/34 (35%), Positives = 24/34 (70%)
 Frame = +3

Query: 132 PLRARREKVEDEDGDGANQLDDEEGTWSETFQSH 233
           P RAR+EKV+ E+ +   ++ +++ T+S+ F S+
Sbjct: 283 PFRARKEKVKREEVE--RRVKEDQETYSDKFTSY 314


>SB_13524| Best HMM Match : K_tetra (HMM E-Value=3.7e-18)
          Length = 495

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
 Frame = +3

Query: 66  EFLDQNGEIAVVLNENSQLLVEPLRARREKVEDEDGDGANQLDDEEGTWSETFQSHHDSK 245
           + LDQ  E  V+L++ ++  ++ L+     +ED + +  N LD  E +     Q  HD++
Sbjct: 315 DILDQKLERLVMLHKKTEQDIQMLKV----LEDRELEVDNSLDRLEPSAKAAIQRQHDAE 370

Query: 246 PRGTK-QFRSTLSS 284
            R  + Q R TL++
Sbjct: 371 MRCMEVQRRLTLTT 384


>SB_55826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1199

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = +3

Query: 105 NENSQLLVEPLRARREKVEDEDGDGANQLDDEEGT--WSETFQSHHDSKPRGTKQFRSTL 278
           N +S  + E +    ++ E+E G+G  +   EEGT    +   SH DS      Q   +L
Sbjct: 633 NLDSVNINEDVAGDSKRKEEERGEGGEEFSPEEGTEGRDDGSPSHQDSDTEDNSQDIFSL 692

Query: 279 SSLMRI 296
           +   R+
Sbjct: 693 TESERL 698


>SB_45954| Best HMM Match : VWA (HMM E-Value=4e-26)
          Length = 715

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -1

Query: 101 NDCYFSILVQEFEFERFGCYDDFMPLRVD 15
           NDC      Q FE+ER GCY D     +D
Sbjct: 57  NDCENG---QYFEYERLGCYKDAALAAID 82


>SB_31182| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1280

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 129  EPLRARREKVEDEDGDGANQLDDE 200
            EP R   +K  DED D  N  +DE
Sbjct: 1089 EPEREEHDKKSDEDTDSLNPFEDE 1112


>SB_8887| Best HMM Match : G-patch (HMM E-Value=1.2e-08)
          Length = 739

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
 Frame = +3

Query: 87  EIAVVLNENSQLLVEPLRARREK------VEDEDGDGANQLDDEEG 206
           +I  + N  +Q  VE  + R+EK      ++D+DGD  N  DD +G
Sbjct: 286 DIQAIAN-TAQESVEKQKRRKEKKIKGLAIQDDDGDDDNNDDDNDG 330


>SB_51541| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 254 APRFGVVMGLEGLTPSSFL 198
           APRFG+++G   L PSS L
Sbjct: 65  APRFGLLVGASDLEPSSVL 83


>SB_13995| Best HMM Match : ASC (HMM E-Value=0.0034)
          Length = 610

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
 Frame = +3

Query: 30  HKVIITSEPLKLEFLDQNGEIAVVLNENS--QLLVEPLRARREKVEDEDGDGANQLDDEE 203
           H+ I  S   +LEF         V+ ++   QL    L+   +K  D+D D  +  DD+E
Sbjct: 353 HRSIPLSRSSRLEFPSVTVCNFNVIKKSKIDQLGNSDLKESFKKFADDDDDDDDDDDDDE 412

Query: 204 GTWSETFQSHHDSKPRGTKQFRS 272
            T S  FQ    +    T+   S
Sbjct: 413 PTTSANFQPTSTANSNNTEPVSS 435


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,083,712
Number of Sequences: 59808
Number of extensions: 243056
Number of successful extensions: 1036
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)