Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20517
         (509 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein...   125   4e-30
SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein S18|Schizos...   125   4e-30
SPCC1795.07 |||mitochondrial ribosomal protein subunit S37 |Schi...    34   0.014
SPAC227.07c |pab1||protein phosphatase regulatory subunit Pab1|S...    26   2.9  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    26   3.8  
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    25   5.0  
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    25   6.6  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    25   6.6  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    25   6.6  
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    25   8.7  
SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   8.7  

>SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein
           S18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 152

 Score =  125 bits (301), Expect = 4e-30
 Identities = 56/78 (71%), Positives = 67/78 (85%)
 Frame = +1

Query: 28  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 207
           MSLV+PD FQHILR++NTN+DGK KVMFAMT IKGVGRRY+NIV KKADID+ KRAGE T
Sbjct: 1   MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELT 60

Query: 208 EEEVEKIITIMSNPRHIR 261
            EE+E+I+TI+ NP   +
Sbjct: 61  TEELERIVTIIQNPSQFK 78



 Score = 97.5 bits (232), Expect = 1e-21
 Identities = 44/59 (74%), Positives = 50/59 (84%)
 Frame = +3

Query: 255 YKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 431
           +KIP WFLNRQKDI DGK  QL ++N+DSKLREDLERLKKI+ HRG+RH   LRVRGQH
Sbjct: 77  FKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTHRGLRHALDLRVRGQH 135


>SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein
           S18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 152

 Score =  125 bits (301), Expect = 4e-30
 Identities = 56/78 (71%), Positives = 67/78 (85%)
 Frame = +1

Query: 28  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 207
           MSLV+PD FQHILR++NTN+DGK KVMFAMT IKGVGRRY+NIV KKADID+ KRAGE T
Sbjct: 1   MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELT 60

Query: 208 EEEVEKIITIMSNPRHIR 261
            EE+E+I+TI+ NP   +
Sbjct: 61  TEELERIVTIIQNPSQFK 78



 Score = 97.5 bits (232), Expect = 1e-21
 Identities = 44/59 (74%), Positives = 50/59 (84%)
 Frame = +3

Query: 255 YKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 431
           +KIP WFLNRQKDI DGK  QL ++N+DSKLREDLERLKKI+ HRG+RH   LRVRGQH
Sbjct: 77  FKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTHRGLRHALDLRVRGQH 135


>SPCC1795.07 |||mitochondrial ribosomal protein subunit S37
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 151

 Score = 33.9 bits (74), Expect = 0.014
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +3

Query: 354 DLERLKKIRAHRGMRHYWGLRVRGQH 431
           D+ RL  IR +RGMRH  GL V GQ+
Sbjct: 76  DISRLVNIRCYRGMRHVNGLPVNGQN 101


>SPAC227.07c |pab1||protein phosphatase regulatory subunit
           Pab1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -3

Query: 240 HDSDNFFNLFFCAFASTLVKINVGFFENNVGVPPANT 130
           +++D  F+ F C F+     +  G + NN G+ P ++
Sbjct: 336 YENDCIFDKFECTFSGDDKHVLSGSYSNNFGIYPTDS 372


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 357 NLHGVLNPSWRRSAGCIYHQQYPFAYLGTSLVSY 256
           N H  ++PS R S+  +Y    P  Y  ++ VSY
Sbjct: 495 NNHCAVSPSRRSSSNALYLATLPMGYERSNSVSY 528


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 91  GKRKVMFAMTAIKGVGRRYSNIVLKKADIDL 183
           GK+KV+     I  + R+YSN+  +KA+  L
Sbjct: 10  GKKKVIGNRQCILSLYRKYSNVQSRKAEDQL 40


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = -1

Query: 311 VFTINNILLPI*EPVWYLICLGFDMIVIIFSTSSS 207
           +F+  N L  I   +W++ICLG  + +++ S  ++
Sbjct: 218 IFSHRNSLTRIKIIIWWIICLGCFIFILLRSNRNN 252


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -1

Query: 227 IFSTSSSVHSPARLSRSMSAFLRTMLEYLRPTPLIAVIANITFRLPSMF 81
           I   SSS  S A   + +S+FL+ +L+ +  TP      N  + + S F
Sbjct: 274 ICCNSSSFWSAADSFKEVSSFLKNLLKNVTATPFEVSDMNWAYIIASFF 322


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
 Frame = -3

Query: 285 AYLGTSLVSYMPRIRHDSDNFFNLFFCAFAS--TLVK---INVGFFENNV 151
           AYLG  LVS +P +  + + F  L +  F    +L+    IN  FF NN+
Sbjct: 20  AYLGGRLVSKIPAVYSNDNKFVFLTYDTFIGIFSLITGDCINRIFFPNNL 69


>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = +2

Query: 323 LLQLGFKTP*RFGEAQEDSRSQRDATLLGPSCAWSAH*DYWQERKNCW 466
           L  L FK+       + D   +R AT +  S  W A+  YWQ     W
Sbjct: 43  LRHLPFKSSINEETREWDLSGRRGATTMYSSMNWLANSTYWQTTLVGW 90


>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 127

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = -1

Query: 269 VWYLICLGFDMIVIIFSTSSSVHSPARLSRSMSAFLRTMLEYLR 138
           +++  C  F  +  +   +  V+SP  ++  M+ F+R +L YL+
Sbjct: 54  IYFCYCANFIALFRVIFGTIFVYSPDGITPFMTDFVRWILIYLK 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,080,877
Number of Sequences: 5004
Number of extensions: 42933
Number of successful extensions: 125
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)