Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20517
(509 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99281-11|CAB16517.1| 154|Caenorhabditis elegans Hypothetical p... 115 2e-26
Z81457-5|CAB03817.2| 584|Caenorhabditis elegans Hypothetical pr... 31 0.64
Z81533-13|CAB04336.2| 323|Caenorhabditis elegans Hypothetical p... 30 1.1
Z83216-12|CAB05675.2| 323|Caenorhabditis elegans Hypothetical p... 29 1.5
AF303262-1|AAG50220.1| 362|Caenorhabditis elegans gap junction ... 27 6.0
AF067219-9|AAX88822.1| 266|Caenorhabditis elegans Innexin prote... 27 6.0
AF067219-8|AAC17025.1| 362|Caenorhabditis elegans Innexin prote... 27 6.0
U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical pr... 27 7.9
U53151-3|AAB37067.2| 388|Caenorhabditis elegans Serpentine rece... 27 7.9
>Z99281-11|CAB16517.1| 154|Caenorhabditis elegans Hypothetical
protein Y57G11C.16 protein.
Length = 154
Score = 115 bits (276), Expect = 2e-26
Identities = 50/74 (67%), Positives = 65/74 (87%)
Frame = +1
Query: 28 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 207
MSL+IP+KFQHI R+MNTNIDG RKV +A+TAIKGVGRR++ + +KAD+D++KRAGE T
Sbjct: 1 MSLIIPEKFQHIHRVMNTNIDGNRKVPYALTAIKGVGRRFAFVCCRKADVDVNKRAGELT 60
Query: 208 EEEVEKIITIMSNP 249
EE+ +KI+TIM NP
Sbjct: 61 EEDFDKIVTIMQNP 74
Score = 109 bits (262), Expect = 1e-24
Identities = 47/59 (79%), Positives = 53/59 (89%)
Frame = +3
Query: 255 YKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 431
YKIP+WFLNRQKDI DGK QL S+ +D+KLREDLER+KKIR HRG+RHYWGLRVRGQH
Sbjct: 77 YKIPNWFLNRQKDIKDGKTGQLLSTAVDNKLREDLERMKKIRLHRGLRHYWGLRVRGQH 135
>Z81457-5|CAB03817.2| 584|Caenorhabditis elegans Hypothetical
protein C01G12.7 protein.
Length = 584
Score = 30.7 bits (66), Expect = 0.64
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +1
Query: 349 VKIWRGSRRFALTEGCDITGAFVCVVSTLRLLAGEEELLVYQRRS 483
+K +R + AL +TGA + + +TL LLA LL QR S
Sbjct: 137 IKKYRWGMKMALLFHLCVTGALLSITNTLHLLASGYHLLKRQRNS 181
>Z81533-13|CAB04336.2| 323|Caenorhabditis elegans Hypothetical
protein F36G9.6 protein.
Length = 323
Score = 29.9 bits (64), Expect = 1.1
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 9/87 (10%)
Frame = -1
Query: 299 NNILLPI*EPVWYLICLGFDMIVII------FSTSSSVHSPARLSRSMSAFLRT---MLE 147
NN L+ W+ IC GF+ ++I+ S S+ S A +S L T L
Sbjct: 199 NNFLVMFNTFFWFSICFGFNSVLIVKLIKFKLSVPPSMRSQASHRAEISLTLTTASMSLS 258
Query: 146 YLRPTPLIAVIANITFRLPSMFVFMIR 66
YL LI V+ I + L ++F+ ++R
Sbjct: 259 YL-TNGLITVVGRIFYDL-TLFLIVLR 283
>Z83216-12|CAB05675.2| 323|Caenorhabditis elegans Hypothetical
protein C08F11.4 protein.
Length = 323
Score = 29.5 bits (63), Expect = 1.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 299 NNILLPI*EPVWYLICLGFDMIVII 225
NN LL W+ ICLGF++++I+
Sbjct: 199 NNFLLMFNTFFWFSICLGFNLVLIV 223
>AF303262-1|AAG50220.1| 362|Caenorhabditis elegans gap junction
innexin protein.
Length = 362
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 336 PSWRRSAGCIYHQQYPFAYLGTSLVSYMPRI 244
P+ R + Y+Q PF G ++V Y+PR+
Sbjct: 88 PAIRENKELKYYQWVPFILFGLAVVIYIPRV 118
>AF067219-9|AAX88822.1| 266|Caenorhabditis elegans Innexin protein
17, isoform b protein.
Length = 266
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 336 PSWRRSAGCIYHQQYPFAYLGTSLVSYMPRI 244
P+ R + Y+Q PF G ++V Y+PR+
Sbjct: 88 PAIRENKELKYYQWVPFILFGLAVVIYIPRV 118
>AF067219-8|AAC17025.1| 362|Caenorhabditis elegans Innexin protein
17, isoform a protein.
Length = 362
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 336 PSWRRSAGCIYHQQYPFAYLGTSLVSYMPRI 244
P+ R + Y+Q PF G ++V Y+PR+
Sbjct: 88 PAIRENKELKYYQWVPFILFGLAVVIYIPRV 118
>U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical protein
C13F10.4 protein.
Length = 2076
Score = 27.1 bits (57), Expect = 7.9
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +3
Query: 111 CDDGYQRCWPEVLQHCS 161
C + YQ CWP +L CS
Sbjct: 1512 CREYYQICWPPILLACS 1528
>U53151-3|AAB37067.2| 388|Caenorhabditis elegans Serpentine
receptor, class r protein9 protein.
Length = 388
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -1
Query: 272 PVWYLICLGFDMIVIIFSTSSSVHSPARLSRSMSAFLRTMLEY 144
PV Y I LGF+M IIF + P L + + R ++ +
Sbjct: 276 PVLYCIILGFNMAAIIFYSVFVSIPPCTLQEHLKSTNRILINH 318
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,521,987
Number of Sequences: 27780
Number of extensions: 242368
Number of successful extensions: 774
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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