Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20517
(509 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g09800.1 68417.m01609 40S ribosomal protein S18 (RPS18C) 112 2e-25
At1g34030.1 68414.m04219 40S ribosomal protein S18 (RPS18B) simi... 112 2e-25
At1g22780.1 68414.m02846 40S ribosomal protein S18 (RPS18A) Matc... 112 2e-25
At5g14320.1 68418.m01674 30S ribosomal protein S13, chloroplast ... 32 0.20
At5g62470.2 68418.m07840 myb family transcription factor (MYB96)... 29 1.4
At5g62470.1 68418.m07839 myb family transcription factor (MYB96)... 29 1.4
At1g61710.1 68414.m06960 DC1 domain-containing protein contains ... 29 1.4
At5g49610.1 68418.m06139 F-box family protein contains Pfam PF00... 29 2.4
At1g77750.1 68414.m09052 30S ribosomal protein S13, chloroplast,... 29 2.4
At4g10960.1 68417.m01781 UDP-glucose 4-epimerase, putative / UDP... 28 3.2
>At4g09800.1 68417.m01609 40S ribosomal protein S18 (RPS18C)
Length = 152
Score = 112 bits (269), Expect = 2e-25
Identities = 46/78 (58%), Positives = 68/78 (87%)
Frame = +1
Query: 28 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 207
MSLV ++FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAGE +
Sbjct: 1 MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60
Query: 208 EEEVEKIITIMSNPRHIR 261
E++ ++TI++NPR +
Sbjct: 61 AAEIDNLMTIVANPRQFK 78
Score = 111 bits (268), Expect = 2e-25
Identities = 48/59 (81%), Positives = 53/59 (89%)
Frame = +3
Query: 255 YKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 431
+KIPDWFLNRQKD DGKYSQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGLRVRGQH
Sbjct: 77 FKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 135
>At1g34030.1 68414.m04219 40S ribosomal protein S18 (RPS18B) similar
to ribosomal protein S18 GI:38422 from [Homo sapiens]
Length = 152
Score = 112 bits (269), Expect = 2e-25
Identities = 46/78 (58%), Positives = 68/78 (87%)
Frame = +1
Query: 28 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 207
MSLV ++FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAGE +
Sbjct: 1 MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60
Query: 208 EEEVEKIITIMSNPRHIR 261
E++ ++TI++NPR +
Sbjct: 61 AAEIDNLMTIVANPRQFK 78
Score = 111 bits (268), Expect = 2e-25
Identities = 48/59 (81%), Positives = 53/59 (89%)
Frame = +3
Query: 255 YKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 431
+KIPDWFLNRQKD DGKYSQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGLRVRGQH
Sbjct: 77 FKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 135
>At1g22780.1 68414.m02846 40S ribosomal protein S18 (RPS18A) Match
to ribosomal S18 gene mRNA gb|Z28701, DNA gb|Z23165 from
A. thaliana. ESTs gb|T21121, gb|Z17755, gb|R64776 and
gb|R30430 come from this gene
Length = 152
Score = 112 bits (269), Expect = 2e-25
Identities = 46/78 (58%), Positives = 68/78 (87%)
Frame = +1
Query: 28 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 207
MSLV ++FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAGE +
Sbjct: 1 MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60
Query: 208 EEEVEKIITIMSNPRHIR 261
E++ ++TI++NPR +
Sbjct: 61 AAEIDNLMTIVANPRQFK 78
Score = 111 bits (268), Expect = 2e-25
Identities = 48/59 (81%), Positives = 53/59 (89%)
Frame = +3
Query: 255 YKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 431
+KIPDWFLNRQKD DGKYSQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGLRVRGQH
Sbjct: 77 FKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 135
>At5g14320.1 68418.m01674 30S ribosomal protein S13, chloroplast
(CS13) ribosomal protein S13 precursor, chloroplast
Arabidopsis thaliana, PIR:S59594; identical to cDNA
ribosomal protein S13 GI:1515106
Length = 169
Score = 32.3 bits (70), Expect = 0.20
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = +3
Query: 357 LERLKKIRAHRGMRHYWGLRVRGQ 428
++RLK+I+ +RG+RH GL RGQ
Sbjct: 122 IKRLKEIQCYRGVRHIQGLPCRGQ 145
>At5g62470.2 68418.m07840 myb family transcription factor (MYB96)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 352
Score = 29.5 bits (63), Expect = 1.4
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Frame = -3
Query: 309 IYHQQYPFAYLGTSLVSYMP-RIRHDSDNFFNLFFCAFASTLVKINVGFFENNVGVPPAN 133
I H Q ++ SY+P R +D N++N L KIN E+N GV +N
Sbjct: 78 IVHLQALLGNRWAAIASYLPERTDNDIKNYWNTHL---KKKLKKINESGEEDNDGVSSSN 134
Query: 132 TFDSRHRKHNLSFAIDVRIHDTKNMLK 52
T ++ + + R+ NM K
Sbjct: 135 TSSQKNHQSTNKGQWERRLQTDINMAK 161
>At5g62470.1 68418.m07839 myb family transcription factor (MYB96)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 351
Score = 29.5 bits (63), Expect = 1.4
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Frame = -3
Query: 309 IYHQQYPFAYLGTSLVSYMP-RIRHDSDNFFNLFFCAFASTLVKINVGFFENNVGVPPAN 133
I H Q ++ SY+P R +D N++N L KIN E+N GV +N
Sbjct: 77 IVHLQALLGNRWAAIASYLPERTDNDIKNYWNTHL---KKKLKKINESGEEDNDGVSSSN 133
Query: 132 TFDSRHRKHNLSFAIDVRIHDTKNMLK 52
T ++ + + R+ NM K
Sbjct: 134 TSSQKNHQSTNKGQWERRLQTDINMAK 160
>At1g61710.1 68414.m06960 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 402
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = -3
Query: 264 VSYMPRIRHDSDN-FFNLFFCAFASTLVKINVGFFENNVGVPPANT 130
++Y+ ++ + FFNLFF A +KI +G F ++ +PP+++
Sbjct: 20 IAYLHPVKQSAMTIFFNLFFYAQVHENLKIELGIFSRSI-LPPSSS 64
>At5g49610.1 68418.m06139 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
protein interaction domain; similar to unknown protein
(gb|AAF30317.1)
Length = 359
Score = 28.7 bits (61), Expect = 2.4
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +1
Query: 400 ITGAF-VCVVSTLRLLAGEEELLVYQRRSKLNK 495
+ G F +C LA +++LVYQRRSKL K
Sbjct: 299 VPGIFPICQTGEYVFLATHKQVLVYQRRSKLWK 331
>At1g77750.1 68414.m09052 30S ribosomal protein S13, chloroplast,
putative similar to putative 30S ribosomal protein S13,
chloroplast precursor GB:P42732 [Arabidopsis thaliana]
Length = 154
Score = 28.7 bits (61), Expect = 2.4
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 333 LDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 428
L ++ +++RL ++ +RG RH GL RGQ
Sbjct: 98 LRRRVGSEIQRLVEVDCYRGSRHRHGLPCRGQ 129
>At4g10960.1 68417.m01781 UDP-glucose 4-epimerase, putative /
UDP-galactose 4-epimerase, putative / Galactowaldenase,
putative similar to UDP-galactose 4-epimerase from
Arabidopsis thaliana SP|Q42605, Cyamopsis tetragonoloba
GI:3021357 [AJ005082]
Length = 351
Score = 28.3 bits (60), Expect = 3.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 303 GKYSQLTSSNLDSKLREDLERLKKIRAHRGMR 398
G YS + NLD+ L+R+KK+ A G R
Sbjct: 26 GGYSVVVVDNLDNSSAVSLQRVKKLAAEHGER 57
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,767,187
Number of Sequences: 28952
Number of extensions: 222408
Number of successful extensions: 638
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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