Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20515
(554 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0093 + 702223-702348,703434-703556,703646-703702,703797-70... 121 3e-28
03_06_0030 + 31161821-31161927,31163700-31163934,31164064-311648... 119 2e-27
07_03_1141 - 24264534-24264635,24265542-24265616,24265709-242657... 118 2e-27
12_02_0477 + 19503678-19503803,19504381-19504422,19504631-195046... 115 2e-26
07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659 40 0.001
03_04_0133 + 17585278-17585282,17586257-17586386,17587444-175875... 32 0.27
07_03_0434 + 18175560-18175695,18176068-18176177,18176553-181766... 31 0.82
04_01_0576 + 7466032-7466802,7468382-7468444,7469043-7469122,746... 30 1.4
11_06_0437 - 23533218-23536382 29 3.3
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585 29 3.3
02_01_0244 + 1603381-1603792,1604054-1604132,1604993-1605862,160... 29 3.3
02_05_0664 + 30717551-30719491 28 4.4
02_01_0443 + 3204142-3204674,3205446-3206178 28 4.4
04_01_0031 + 381389-381841 28 5.8
01_06_1303 - 36132588-36132710,36133879-36134103,36134318-361347... 28 5.8
03_03_0008 - 13674602-13674708,13675272-13675439,13676169-136767... 27 7.6
03_02_0646 + 10141967-10142476,10143721-10144254 27 7.6
02_01_0363 - 2612873-2613814 27 7.6
02_01_0358 - 2575858-2576796 27 7.6
>07_01_0093 +
702223-702348,703434-703556,703646-703702,703797-703871,
704105-704212
Length = 162
Score = 121 bits (292), Expect = 3e-28
Identities = 51/76 (67%), Positives = 64/76 (84%)
Frame = +1
Query: 256 STSKTGKHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM 435
STSKTGKHGHAK H VGIDIFNGKK EDI PS+HN DVPHV R DYQL DIS+DG+++L+
Sbjct: 47 STSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVDRTDYQLIDISEDGFVSLL 106
Query: 436 ADNGDLREDLKIPDGD 483
++G+ ++DL++P D
Sbjct: 107 TESGNTKDDLRLPTDD 122
Score = 61.7 bits (143), Expect = 4e-10
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Frame = +2
Query: 122 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKGRPCKIVESPHPKPESTATLKFT 298
M D E+ HFE+ D+GAS T+P Q +RKNG++++K RPCK+VE K K
Sbjct: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH 60
Query: 299 WLGLISSMVKSMKISVP 349
++G+ K ++ VP
Sbjct: 61 FVGIDIFNGKKLEDIVP 77
>03_06_0030 + 31161821-31161927,31163700-31163934,31164064-31164826,
31165816-31167650,31169294-31169424,31169993-31170075,
31170426-31170680,31171125-31171220,31171695-31171775,
31171811-31171968,31172434-31172534,31172614-31172629,
31173390-31173439,31174558-31174588,31175156-31175305,
31176135-31176173,31176288-31176410,31176496-31176552,
31176837-31176911,31177003-31177107
Length = 1496
Score = 119 bits (286), Expect = 2e-27
Identities = 53/83 (63%), Positives = 67/83 (80%), Gaps = 1/83 (1%)
Frame = +1
Query: 256 STSKTGKHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM 435
STSKTGKHGHAK H V IDIFNGKK EDI PS+HN DVPHV R DYQL DIS+DG+++L+
Sbjct: 1382 STSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLL 1441
Query: 436 ADNGDLREDLKIP-DGDLGTQLR 501
++G ++DL++P D L TQ++
Sbjct: 1442 TESGGTKDDLRLPSDEALLTQIK 1464
Score = 53.6 bits (123), Expect = 1e-07
Identities = 22/42 (52%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Frame = +2
Query: 122 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKGRPCK 244
M D E+ HFE+ D+GAS T+P Q +RKNG +++K RPCK
Sbjct: 1323 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCK 1364
>07_03_1141 -
24264534-24264635,24265542-24265616,24265709-24265765,
24265903-24266025,24266509-24266520,24267014-24267157,
24267606-24267626
Length = 177
Score = 118 bits (285), Expect = 2e-27
Identities = 52/84 (61%), Positives = 68/84 (80%), Gaps = 1/84 (1%)
Frame = +1
Query: 256 STSKTGKHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM 435
STSKTGKHGHAK H V IDIFNGKK EDI PS+HN DVPHV R +YQL DIS+DG+++L+
Sbjct: 64 STSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLL 123
Query: 436 ADNGDLREDLKIP-DGDLGTQLRT 504
++G+ ++DL++P D L Q++T
Sbjct: 124 TESGNTKDDLRLPTDDSLLGQIKT 147
Score = 55.2 bits (127), Expect = 3e-08
Identities = 22/42 (52%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
Frame = +2
Query: 122 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKGRPCK 244
M D E+ HFE+ D+GAS T+P Q +RKNG++++K RPCK
Sbjct: 14 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCK 55
>12_02_0477 +
19503678-19503803,19504381-19504422,19504631-19504684,
19504946-19505068,19505154-19505210,19505299-19505373,
19505925-19506026
Length = 192
Score = 115 bits (277), Expect = 2e-26
Identities = 50/83 (60%), Positives = 67/83 (80%), Gaps = 1/83 (1%)
Frame = +1
Query: 256 STSKTGKHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM 435
STSKTGKHGHAK H V IDIF KK EDI PS+HN DVPHV R +YQL DIS+DG+++L+
Sbjct: 79 STSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLL 138
Query: 436 ADNGDLREDLKIP-DGDLGTQLR 501
+NG+ ++DL++P D +L +Q++
Sbjct: 139 TENGNTKDDLRLPTDDNLLSQIK 161
Score = 55.2 bits (127), Expect = 3e-08
Identities = 22/42 (52%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
Frame = +2
Query: 122 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKGRPCK 244
M D E+ HFE+ D+GAS T+P Q +RKNG++++K RPCK
Sbjct: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCK 42
>07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659
Length = 175
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/46 (41%), Positives = 34/46 (73%), Gaps = 2/46 (4%)
Frame = +1
Query: 373 HVKREDYQLTDISDDG-YLTLMADNGDLREDLKIPDGD-LGTQLRT 504
H+ R +YQL DIS+DG +++L+ ++G+ ++DL +P D L Q++T
Sbjct: 46 HMNRTNYQLIDISEDGLFVSLLTESGNTKDDLGLPTYDNLLGQIKT 91
>03_04_0133 +
17585278-17585282,17586257-17586386,17587444-17587591,
17587661-17587849,17587999-17589150,17589303-17589466
Length = 595
Score = 32.3 bits (70), Expect = 0.27
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 294 NFSVAVLSGFGCGLSTILHG-RPFSITKPF 208
NFS + L G C LST+ HG RP S +PF
Sbjct: 125 NFSFSSLPGSSCHLSTLDHGKRPLSDVRPF 154
>07_03_0434 +
18175560-18175695,18176068-18176177,18176553-18176616,
18176839-18176915,18177152-18177223,18178337-18178456
Length = 192
Score = 30.7 bits (66), Expect = 0.82
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +1
Query: 364 DVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGD 483
D P+ RE +++ ++ D Y+T D+G L ED+K+ G+
Sbjct: 38 DFPNFIREGFEVKVVTSDNYIT--RDSGLLYEDIKVGTGN 75
>04_01_0576 +
7466032-7466802,7468382-7468444,7469043-7469122,
7469505-7469622,7470035-7470067,7470400-7470474,
7470887-7471043,7471142-7471230,7472041-7472294,
7472977-7473148,7473250-7473333,7473626-7473730,
7474055-7474363,7474622-7474756,7476236-7476317,
7476423-7476502,7476622-7476783,7477071-7477138,
7478422-7478502,7478634-7478760,7478816-7478879,
7480808-7480854,7481042-7481335
Length = 1149
Score = 29.9 bits (64), Expect = 1.4
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 123 WVTSKTHTLRPETPGPQPPSPCNV 194
W+T T P+ P P PP PC+V
Sbjct: 52 WLTWPPPTPLPDAPPPPPPHPCDV 75
>11_06_0437 - 23533218-23536382
Length = 1054
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +1
Query: 283 HAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDG 420
HA LV + I N +K DI D+ H K+E Y+L + G
Sbjct: 179 HACRKLVDLVIKNKEKTADIENKEKKADIEHKKKEPYKLAIVGTGG 224
>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
Length = 268
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +3
Query: 162 PGPQPPSPCNVRPCVKTVSLC 224
P PQPP PC PC K C
Sbjct: 81 PLPQPPPPCKPPPCEKPPEDC 101
>02_01_0244 +
1603381-1603792,1604054-1604132,1604993-1605862,
1606019-1606276,1606675-1606834
Length = 592
Score = 28.7 bits (61), Expect = 3.3
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Frame = +3
Query: 162 PGPQPPSPCNVRPCVKTVS-----LC*RVVHARLLKVHIQNRKARPR*SSLGWD 308
PG +PP+P ++R +K +S L + ARL K ++N + P SL W+
Sbjct: 125 PGEEPPAPLSLRDDIKNLSSGDVHLYCKACSARLTKQPLRNIEEMP---SLNWE 175
>02_05_0664 + 30717551-30719491
Length = 646
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +1
Query: 217 RYAEGSSMQDC*KSTS-KTGK--HGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHV 378
R+ GS + C + +G+ HG+ L+ D+ G D+ HNM++ H+
Sbjct: 362 RFTLGSGVTACARLADIDSGRAFHGYLVRRLLDTDVIQGSALVDMYGKCHNMELAHI 418
>02_01_0443 + 3204142-3204674,3205446-3206178
Length = 421
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +2
Query: 191 CSALRKNGFVMLKGRPCKIVESPHPKPESTATLKFTWLGLISSMVKSMKISVPP 352
C LR+ V L ++VE P+ TATL T L+++ V ++ ++ PP
Sbjct: 42 CGVLRERKVVELARAKRRLVEVPY-----TATLAHTANALLAARVSAVAVAAPP 90
>04_01_0031 + 381389-381841
Length = 150
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Frame = +3
Query: 111 KTQQWVTSKTHTLR-----PETPGPQPPSPCNVRP 200
+ ++W T +T TLR P+T P PP P P
Sbjct: 69 RERRWCTPRTSTLRREWALPDTASPPPPLPLEPAP 103
>01_06_1303 -
36132588-36132710,36133879-36134103,36134318-36134713,
36135352-36135547,36135591-36135740,36135818-36135924,
36135987-36136094,36136354-36136435,36136436-36136536,
36136778-36136996,36137455-36137583,36137665-36137742,
36137816-36137929,36138071-36138230,36139224-36139441
Length = 801
Score = 27.9 bits (59), Expect = 5.8
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +2
Query: 107 IQNTTMGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIV 250
+Q ++ D E H T +ATFPM L N + +GR CK V
Sbjct: 431 VQPRSIIDREAMHRGTSIFLPTATFPMFPERLAMNAMSLQQGRGCKSV 478
>03_03_0008 - 13674602-13674708,13675272-13675439,13676169-13676787,
13676868-13677330,13677855-13678036,13678093-13678235,
13678315-13678423,13679000-13679456,13680490-13682473,
13682507-13682626,13682920-13682971
Length = 1467
Score = 27.5 bits (58), Expect = 7.6
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +3
Query: 129 TSKTHTLRPETPGPQPPSP 185
TS HTL P P +PPSP
Sbjct: 1108 TSDRHTLGPPLPDDRPPSP 1126
>03_02_0646 + 10141967-10142476,10143721-10144254
Length = 347
Score = 27.5 bits (58), Expect = 7.6
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = -3
Query: 447 TVVSHQGQVAIIRDISQLVVFALHVGYVHVVCGGTDIFILFTIEDINPNQVNFSVAVLSG 268
TVV +G A+ + ++ FA H+ + + G++ + +D +V+ + SG
Sbjct: 84 TVVRSEGVRALWKGLTP---FATHLTLKYALRLGSNAVLQSAFKDPGTGKVSAHGRLASG 140
Query: 267 FGCG-LSTILHGRPFSITKP 211
FG G L +L PF P
Sbjct: 141 FGAGVLEALLIVTPFEARSP 160
>02_01_0363 - 2612873-2613814
Length = 313
Score = 27.5 bits (58), Expect = 7.6
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +3
Query: 114 TQQWVTSKTHTLRPETPGPQPPSPC 188
+ +W + +P P P PPSPC
Sbjct: 96 SDKWEVGDNYLWQPLPPPPPPPSPC 120
>02_01_0358 - 2575858-2576796
Length = 312
Score = 27.5 bits (58), Expect = 7.6
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +3
Query: 114 TQQWVTSKTHTLRPETPGPQPPSPC 188
+ +W + +P P P PPSPC
Sbjct: 96 SDKWEVGDNYLWQPLPPPPPPPSPC 120
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,213,457
Number of Sequences: 37544
Number of extensions: 365824
Number of successful extensions: 1337
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1330
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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