Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20515
(554 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15) 69 2e-12
SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75) 29 1.9
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_54795| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_43823| Best HMM Match : MAM (HMM E-Value=0) 28 4.5
SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94) 28 4.5
SB_30225| Best HMM Match : Peptidase_S8 (HMM E-Value=0.0034) 25 6.7
SB_40675| Best HMM Match : DUF572 (HMM E-Value=1.2) 27 7.8
SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
>SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)
Length = 710
Score = 69.3 bits (162), Expect = 2e-12
Identities = 32/61 (52%), Positives = 40/61 (65%)
Frame = +2
Query: 116 TTMGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVESPHPKPESTATLKF 295
T ++ DT F +G+SGAS T+P QCS+LRKNG V++KGRPCKIVE K K
Sbjct: 585 TMAEELADTEFHSGESGASDTYPAQCSSLRKNGHVVIKGRPCKIVEMSTSKTGKHGHAKV 644
Query: 296 T 298
T
Sbjct: 645 T 645
Score = 49.6 bits (113), Expect = 2e-06
Identities = 20/44 (45%), Positives = 30/44 (68%)
Frame = +1
Query: 394 QLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDSTAARN 525
++T+I +DGYL LM DNGD R D+K+ D D+ ++R A+ N
Sbjct: 643 KVTNIEEDGYLELMDDNGDTRADIKLQDNDIAKEIRAKFEASEN 686
>SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)
Length = 568
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 129 TSKTHTLRPETPGPQPPSPCNVRPCVKTVSLC*RVVH 239
T+K HT +P T P P N+ P + + +L ++H
Sbjct: 168 TTKPHTTKPHTTKPHTTKPHNIDPTLPSPTLLNALLH 204
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 93 LTVVKFKTQQWVTSKTHTLRPETPGPQPPSPCNVRPC 203
L K KT + T+K +T +P T P+ P +PC
Sbjct: 96 LYTTKPKTTKPHTNKPYTTKPRTTKPRTTKPHTTKPC 132
>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1671
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = +1
Query: 319 NGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNG 447
NG Y CP N D + EDY + D YLT D G
Sbjct: 400 NGHTYHMTCPGQTNFDPAKKRCEDYDCSG-RDVAYLTDQNDGG 441
>SB_54795| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1220
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/42 (28%), Positives = 17/42 (40%)
Frame = +3
Query: 66 IVIFLILSFLTVVKFKTQQWVTSKTHTLRPETPGPQPPSPCN 191
+ + L L L + T W + P P P PP PC+
Sbjct: 115 VALLLALLVLADMFVNTDAWRRRRRRNPPPPPPPPSPPPPCH 156
>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
Length = 1724
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = -1
Query: 218 RNRFYAGPNIAW--GRWLRPRSLRSQSV 141
R F+ PN+A G+WL P+SLR+ V
Sbjct: 947 REGFFNNPNLAGCKGQWLGPKSLRASRV 974
>SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)
Length = 1058
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +3
Query: 96 TVVKFKTQQWVTSKTHTLRPETPGPQPPSPCNVRP 200
+VV + VT K T +P TP P P P RP
Sbjct: 758 SVVAMPAARPVTPKPVTPKPVTPKPVTPKPVTTRP 792
>SB_30225| Best HMM Match : Peptidase_S8 (HMM E-Value=0.0034)
Length = 605
Score = 25.0 bits (52), Expect(2) = 6.7
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +3
Query: 135 KTHTLRPETPGPQPPSP 185
K H +P P P PPSP
Sbjct: 344 KEHPDKPRDPAPVPPSP 360
Score = 21.0 bits (42), Expect(2) = 6.7
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = +3
Query: 159 TPGPQPPSPCNVRPCVKT 212
T GP PP+ N +P T
Sbjct: 377 TFGPPPPAASNAKPAQYT 394
>SB_40675| Best HMM Match : DUF572 (HMM E-Value=1.2)
Length = 929
Score = 27.5 bits (58), Expect = 7.8
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +1
Query: 367 VPHVKRED--YQLTDISDDGYLTLMADNG-DLREDLKIPDGDLGTQLRTDS 510
VP VK+ + Y++ D+SDD + M + G ++ L++P + DS
Sbjct: 711 VPIVKQAEAPYEMIDLSDDSSCSSMDERGYEINSSLQLPSNSSRSSWELDS 761
>SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 393
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 117 QQWVTSKTHTLRPETPGPQPPSPCNVRPCVKT 212
+Q V S P P P PP+PC + PC +T
Sbjct: 126 EQHVVSHVMHPAPPPPPPPPPAPC-MPPCHQT 156
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,898,776
Number of Sequences: 59808
Number of extensions: 419457
Number of successful extensions: 1227
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1217
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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