Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20515
(554 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49967-1|CAA90247.1| 161|Caenorhabditis elegans Hypothetical pr... 115 2e-26
Z27079-13|CAA81597.2| 195|Caenorhabditis elegans Hypothetical p... 115 3e-26
AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear recep... 29 1.7
AF332209-1|AAK17980.1| 350|Caenorhabditis elegans nuclear recep... 29 1.7
AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormo... 29 1.7
AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormo... 29 1.7
Z74031-2|CAA98454.2| 568|Caenorhabditis elegans Hypothetical pr... 29 3.0
AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical... 29 3.0
S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein. 28 3.9
M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protei... 28 3.9
AF106576-1|AAC78177.2| 664|Caenorhabditis elegans Hypothetical ... 28 3.9
AC006608-2|AAF39756.1| 1147|Caenorhabditis elegans Transformer :... 28 3.9
AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer :... 28 3.9
U40958-5|AAA81764.1| 654|Caenorhabditis elegans Hypothetical pr... 28 5.2
U41550-2|AAA83285.2| 301|Caenorhabditis elegans Hypothetical pr... 27 6.9
U80445-11|AAB37801.2| 479|Caenorhabditis elegans Hypothetical p... 27 9.1
>Z49967-1|CAA90247.1| 161|Caenorhabditis elegans Hypothetical
protein F54C9.1 protein.
Length = 161
Score = 115 bits (277), Expect = 2e-26
Identities = 55/83 (66%), Positives = 66/83 (79%), Gaps = 1/83 (1%)
Frame = +1
Query: 256 STSKTGKHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM 435
STSKTGKHGHAKVH+V IDIF KK EDICPSTHNMDVP VKR +Y L I DDGY +LM
Sbjct: 48 STSKTGKHGHAKVHMVAIDIFTSKKLEDICPSTHNMDVPVVKRREYLLMAI-DDGYCSLM 106
Query: 436 -ADNGDLREDLKIPDGDLGTQLR 501
++ + ++DLK+PD +LG Q+R
Sbjct: 107 DPESCEQKDDLKLPDTELGQQIR 129
Score = 74.1 bits (174), Expect = 6e-14
Identities = 32/40 (80%), Positives = 35/40 (87%)
Frame = +2
Query: 134 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVE 253
+D HF TGDSGA+ATFP QCSALRKN VM+KGRPCKIVE
Sbjct: 7 DDEHFHTGDSGAAATFPKQCSALRKNEHVMIKGRPCKIVE 46
>Z27079-13|CAA81597.2| 195|Caenorhabditis elegans Hypothetical
protein T05G5.10 protein.
Length = 195
Score = 115 bits (276), Expect = 3e-26
Identities = 54/83 (65%), Positives = 67/83 (80%), Gaps = 1/83 (1%)
Frame = +1
Query: 256 STSKTGKHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM 435
STSKTGKHGHAKVH+V IDIF KK EDICPSTHNMDVP VKR +Y L I +DG+ +LM
Sbjct: 82 STSKTGKHGHAKVHMVAIDIFTTKKLEDICPSTHNMDVPVVKRREYILMSI-EDGFCSLM 140
Query: 436 -ADNGDLREDLKIPDGDLGTQLR 501
++ +L++DLK+P+GDLG +R
Sbjct: 141 DPESCELKDDLKMPEGDLGNTIR 163
Score = 63.3 bits (147), Expect = 1e-10
Identities = 26/40 (65%), Positives = 34/40 (85%)
Frame = +2
Query: 134 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVE 253
++ F++ +SGA+ATFP QCSALRKN VM++GRPCKIVE
Sbjct: 41 DEEQFDSAESGAAATFPKQCSALRKNEHVMIRGRPCKIVE 80
>AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear receptor
NHR-80 protein.
Length = 486
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Frame = +3
Query: 99 VVKFKTQQWVTSKTH-----TLRPETPGPQPPSPCNVRPCVKTV 215
V+K T + ++S T T TPGP P +PC+ P V T+
Sbjct: 149 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 192
>AF332209-1|AAK17980.1| 350|Caenorhabditis elegans nuclear receptor
NHR-80 protein.
Length = 350
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Frame = +3
Query: 99 VVKFKTQQWVTSKTH-----TLRPETPGPQPPSPCNVRPCVKTV 215
V+K T + ++S T T TPGP P +PC+ P V T+
Sbjct: 13 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 56
>AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 80, isoform b protein.
Length = 504
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Frame = +3
Query: 99 VVKFKTQQWVTSKTH-----TLRPETPGPQPPSPCNVRPCVKTV 215
V+K T + ++S T T TPGP P +PC+ P V T+
Sbjct: 167 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 210
>AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 80, isoform a protein.
Length = 486
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Frame = +3
Query: 99 VVKFKTQQWVTSKTH-----TLRPETPGPQPPSPCNVRPCVKTV 215
V+K T + ++S T T TPGP P +PC+ P V T+
Sbjct: 149 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 192
>Z74031-2|CAA98454.2| 568|Caenorhabditis elegans Hypothetical
protein F32D8.2 protein.
Length = 568
Score = 28.7 bits (61), Expect = 3.0
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Frame = +1
Query: 313 IFNGKKYEDICPSTHNMDVPHVKREDYQLT------DISDDGYLTLMADN-GDLREDLK 468
IF + ED+ T + H+ R + ++ D+S DGYLTL + N DL D++
Sbjct: 74 IFFPNEDEDVFGLTPDKSKQHIVRGECKINELNEKVDLSSDGYLTLRSKNTNDLPSDIR 132
>AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical
protein F59E12.1 protein.
Length = 811
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 129 TSKTHTLRPETPGPQPPSPCNVRP 200
T K T R E+P P PP P RP
Sbjct: 358 TEKPETPRAESPDPLPPPPSKKRP 381
>S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.
Length = 1475
Score = 28.3 bits (60), Expect = 3.9
Identities = 17/66 (25%), Positives = 31/66 (46%)
Frame = -3
Query: 312 INPNQVNFSVAVLSGFGCGLSTILHGRPFSITKPFLRRAEHCMGKVAEAPESPVSKCVSS 133
IN +N +V + S G TI + F + F + E + ++ + + +SKC +
Sbjct: 838 INDEPINSAVTLFSEKSSGNQTIANPFKFRLRYGFDAKNETTVIEIVQKIDELLSKCSKN 897
Query: 132 MSPIVV 115
+SP V
Sbjct: 898 LSPKAV 903
>M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protein
protein.
Length = 1475
Score = 28.3 bits (60), Expect = 3.9
Identities = 17/66 (25%), Positives = 31/66 (46%)
Frame = -3
Query: 312 INPNQVNFSVAVLSGFGCGLSTILHGRPFSITKPFLRRAEHCMGKVAEAPESPVSKCVSS 133
IN +N +V + S G TI + F + F + E + ++ + + +SKC +
Sbjct: 838 INDEPINSAVTLFSEKSSGNQTIANPFKFRLRYGFDAKNETTVIEIVQKIDELLSKCSKN 897
Query: 132 MSPIVV 115
+SP V
Sbjct: 898 LSPKAV 903
>AF106576-1|AAC78177.2| 664|Caenorhabditis elegans Hypothetical
protein W07E6.1 protein.
Length = 664
Score = 28.3 bits (60), Expect = 3.9
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Frame = +1
Query: 325 KKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM---ADNGDLREDLKIPDGDLGTQ 495
KK + H + P + E QL D +DG L +D+ DLR+D D D G
Sbjct: 45 KKVKKSAKKAHEEE-PIEQVEKLQLIDDDEDGLEGLSFPGSDDEDLRDDYSDDDSDAGDH 103
Query: 496 LRTDSTAA 519
L + +A
Sbjct: 104 LPIEKKSA 111
>AC006608-2|AAF39756.1| 1147|Caenorhabditis elegans Transformer : xx
animals transformedinto males protein 2, isoform b
protein.
Length = 1147
Score = 28.3 bits (60), Expect = 3.9
Identities = 17/66 (25%), Positives = 31/66 (46%)
Frame = -3
Query: 312 INPNQVNFSVAVLSGFGCGLSTILHGRPFSITKPFLRRAEHCMGKVAEAPESPVSKCVSS 133
IN +N +V + S G TI + F + F + E + ++ + + +SKC +
Sbjct: 838 INDEPINSAVTLFSEKSSGNQTIANPFKFRLRYGFDAKNETTVIEIVQKIDELLSKCSKN 897
Query: 132 MSPIVV 115
+SP V
Sbjct: 898 LSPKAV 903
>AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer : xx
animals transformedinto males protein 2, isoform a
protein.
Length = 1475
Score = 28.3 bits (60), Expect = 3.9
Identities = 17/66 (25%), Positives = 31/66 (46%)
Frame = -3
Query: 312 INPNQVNFSVAVLSGFGCGLSTILHGRPFSITKPFLRRAEHCMGKVAEAPESPVSKCVSS 133
IN +N +V + S G TI + F + F + E + ++ + + +SKC +
Sbjct: 838 INDEPINSAVTLFSEKSSGNQTIANPFKFRLRYGFDAKNETTVIEIVQKIDELLSKCSKN 897
Query: 132 MSPIVV 115
+SP V
Sbjct: 898 LSPKAV 903
>U40958-5|AAA81764.1| 654|Caenorhabditis elegans Hypothetical
protein F09F9.4 protein.
Length = 654
Score = 27.9 bits (59), Expect = 5.2
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -3
Query: 216 KPFLRRAEHCMGKVAEAPESPVSKCVSSMSP 124
+P +R+++C G + E E ++KC +M P
Sbjct: 345 EPVPKRSKYCDGPLIETQECTLTKCPEAMMP 375
>U41550-2|AAA83285.2| 301|Caenorhabditis elegans Hypothetical
protein R04A9.3 protein.
Length = 301
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 412 DDGYLTLMADNGDLREDLKIPDGDLGTQLRTDSTAARNCCAPC 540
DD + N RE+L + + +L Q D+++ R C PC
Sbjct: 247 DDSDDEKIDSNNAEREELLLVENELKRQNNEDTSSERECSQPC 289
>U80445-11|AAB37801.2| 479|Caenorhabditis elegans Hypothetical
protein C50F2.8 protein.
Length = 479
Score = 27.1 bits (57), Expect = 9.1
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = -3
Query: 480 TIRDFEVLTQVTVVSHQGQVAIIRDISQLVVFALHVGYVHVVCGGTDIFILFTIEDI 310
T D LTQV V H GQ+ ++ I++ + L G V G D++ IE++
Sbjct: 137 TTVDAGQLTQVEVEKHGGQL-VVTKINEKSNYDLKPGDVITQVDGKDVYFRADIENL 192
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,713,205
Number of Sequences: 27780
Number of extensions: 304698
Number of successful extensions: 927
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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