Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20515
(554 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g13950.1 68414.m01639 eukaryotic translation initiation facto... 121 3e-28
At1g69410.1 68414.m07972 eukaryotic translation initiation facto... 120 9e-28
At1g26630.1 68414.m03243 eukaryotic translation initiation facto... 116 1e-26
At5g03140.1 68418.m00262 lectin protein kinase family protein co... 29 2.1
At3g44530.1 68416.m04786 transducin family protein / WD-40 repea... 29 2.8
At3g51290.1 68416.m05614 proline-rich family protein 28 3.6
At2g28550.1 68415.m03468 AP2 domain-containing transcription fac... 27 6.4
At1g35830.1 68414.m04452 VQ motif-containing protein contains PF... 27 6.4
At2g27680.1 68415.m03354 aldo/keto reductase family protein cont... 27 8.4
>At1g13950.1 68414.m01639 eukaryotic translation initiation factor
5A-1 / eIF-5A 1 identical to SP|Q9XI91 Eukaryotic
translation initiation factor 5A-1 (eIF-5A 1)
{Arabidopsis thaliana}
Length = 158
Score = 121 bits (292), Expect = 3e-28
Identities = 52/76 (68%), Positives = 61/76 (80%)
Frame = +1
Query: 256 STSKTGKHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM 435
STSKTGKHGHAK H V IDIF KK EDI PS+HN DVPHV R DYQL DIS+DGY++L+
Sbjct: 45 STSKTGKHGHAKCHFVAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLL 104
Query: 436 ADNGDLREDLKIPDGD 483
DNG ++DLK+P+ D
Sbjct: 105 TDNGSTKDDLKLPNDD 120
Score = 60.9 bits (141), Expect = 6e-10
Identities = 22/40 (55%), Positives = 32/40 (80%)
Frame = +2
Query: 134 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVE 253
E+ HFE+ D+GAS T+P Q +RKNG++++K RPCK+VE
Sbjct: 4 EEHHFESSDAGASKTYPQQAGTIRKNGYIVIKNRPCKVVE 43
>At1g69410.1 68414.m07972 eukaryotic translation initiation factor
5A, putative / eIF-5A, putative strong similarity to
eukaryotic initiation factor 5A (2) (Nicotiana
plumbaginifolia) GI:19702, SP|Q9AXQ6| Eukaryotic
translation initiation factor 5A-1 (eIF-5A 1)
{Lycopersicon esculentum}
Length = 158
Score = 120 bits (288), Expect = 9e-28
Identities = 55/83 (66%), Positives = 65/83 (78%), Gaps = 1/83 (1%)
Frame = +1
Query: 256 STSKTGKHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM 435
STSKTGKHGHAK H V IDIF KK EDI PS+HN DVPHV R DYQL DIS+DG+++L+
Sbjct: 45 STSKTGKHGHAKCHFVAIDIFTSKKLEDIVPSSHNCDVPHVNRVDYQLIDISEDGFVSLL 104
Query: 436 ADNGDLREDLKIP-DGDLGTQLR 501
DNG ++DLK+P D L TQL+
Sbjct: 105 TDNGSTKDDLKLPTDEALLTQLK 127
Score = 57.2 bits (132), Expect = 7e-09
Identities = 21/40 (52%), Positives = 31/40 (77%)
Frame = +2
Query: 134 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVE 253
++ HFE+ D+GAS T+P Q +RK G +++KGRPCK+VE
Sbjct: 4 DEHHFESSDAGASKTYPQQAGNIRKGGHIVIKGRPCKVVE 43
>At1g26630.1 68414.m03243 eukaryotic translation initiation factor
5A, putative / eIF-5A, putative strong similariy to
SP|Q9AXQ6 Eukaryotic translation initiation factor 5A-1
(eIF-5A 1) {Lycopersicon esculentum}
Length = 159
Score = 116 bits (279), Expect = 1e-26
Identities = 52/83 (62%), Positives = 64/83 (77%), Gaps = 1/83 (1%)
Frame = +1
Query: 256 STSKTGKHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM 435
STSKTGKHGHAK H V IDIF KK EDI PS+HN DVPHV R DYQL DI++DG+++L+
Sbjct: 45 STSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLL 104
Query: 436 ADNGDLREDLKIP-DGDLGTQLR 501
D+G ++DLK+P D L Q+R
Sbjct: 105 TDSGGTKDDLKLPTDDGLTAQMR 127
Score = 52.8 bits (121), Expect = 1e-07
Identities = 24/72 (33%), Positives = 38/72 (52%)
Frame = +2
Query: 134 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVESPHPKPESTATLKFTWLGLI 313
++ HFE +SGAS T+P +RK G +++K RPCK+VE K K ++ +
Sbjct: 4 DEHHFEASESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAID 63
Query: 314 SSMVKSMKISVP 349
K ++ VP
Sbjct: 64 IFTAKKLEDIVP 75
>At5g03140.1 68418.m00262 lectin protein kinase family protein
contains Pfam domains, PF00138: Legume lectins alpha
domain, PF00139: Legume lectins beta domain and PF00069:
Protein kinase domain
Length = 711
Score = 29.1 bits (62), Expect = 2.1
Identities = 18/65 (27%), Positives = 32/65 (49%)
Frame = -3
Query: 321 IEDINPNQVNFSVAVLSGFGCGLSTILHGRPFSITKPFLRRAEHCMGKVAEAPESPVSKC 142
+ + NP ++ S ++ G C +P +T+P +R + A+ PE P++K
Sbjct: 611 LSEFNPEEM--SRVMMVGLACS-------QPDPVTRPTMRSVVQILVGEADVPEVPIAKP 661
Query: 141 VSSMS 127
SSMS
Sbjct: 662 SSSMS 666
>At3g44530.1 68416.m04786 transducin family protein / WD-40 repeat
family protein contains 6 (4 significant) WD-40 repeats
(PF0400); nuclear protein HIRA, mouse, PIR:S68141
Length = 1051
Score = 28.7 bits (61), Expect = 2.8
Identities = 19/76 (25%), Positives = 35/76 (46%)
Frame = +2
Query: 125 GDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVESPHPKPESTATLKFTWL 304
G + HF+ + G T + L+K+ + ++GR +VESP TA+ K
Sbjct: 350 GTVAMIHFDPKELGVRLT-DTELDELKKSRYGDVRGRQANLVESPAQLLLETASTKQAGS 408
Query: 305 GLISSMVKSMKISVPP 352
+S V+ +++ P
Sbjct: 409 KRAASDVQQNQVTTKP 424
>At3g51290.1 68416.m05614 proline-rich family protein
Length = 602
Score = 28.3 bits (60), Expect = 3.6
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 111 KTQQWVTSKTHTLRPETPGPQPPSP 185
+T W T+ T ++ P P P PP P
Sbjct: 91 ETTTWTTTTTSSVLPPPPPPPPPPP 115
>At2g28550.1 68415.m03468 AP2 domain-containing transcription factor
RAP2.7 (RAP2.7) nearly identical to AP2 domain
transcription factor RAP2.7 (GI:2281639) [Arabidopsis
thaliana]
Length = 449
Score = 27.5 bits (58), Expect = 6.4
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 135 KTHTLRPETPGPQPP 179
+T +RP+ PGPQPP
Sbjct: 402 QTSAVRPQPPGPQPP 416
>At1g35830.1 68414.m04452 VQ motif-containing protein contains
PF05678: VQ motif
Length = 302
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +3
Query: 87 SFLTVVKFKTQQWVTSKTHTLRPETPGPQPPSP 185
++L V + ++TH L P+ P P PP P
Sbjct: 60 TYLNFVNNLISDDILNQTHLLPPQPPPPPPPPP 92
>At2g27680.1 68415.m03354 aldo/keto reductase family protein
contains Pfam profile PF00248: oxidoreductase, aldo/keto
reductase family
Length = 384
Score = 27.1 bits (57), Expect = 8.4
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +1
Query: 334 EDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKI 471
++I S MDV + + D ++DGYL + DL+E+ KI
Sbjct: 147 QNIDISRKRMDVAALDMLQFHWWDYANDGYLDALKHLTDLKEEGKI 192
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,840,253
Number of Sequences: 28952
Number of extensions: 283606
Number of successful extensions: 876
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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