Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20514
(668 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy... 27 2.4
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.2
SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces... 26 4.3
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 4.3
SPAC1F5.08c |yam8|ehs1|calcium transport protein|Schizosaccharom... 26 5.6
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 7.5
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 25 7.5
SPAC1952.07 |rad1||checkpoint clamp complex protein Rad1|Schizos... 25 7.5
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po... 25 9.9
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 25 9.9
SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 9.9
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po... 25 9.9
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2... 25 9.9
>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 523
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +3
Query: 453 SSYQYWSKMEVSS*TYRSQFHLNVLKSFIELFNANSRAVVDKLKKEASNFD 605
S Y WSK S F +N + F+EL A R ++ +K N++
Sbjct: 26 SKYDLWSKAMDEKKLSSSLFTVNDTQEFLELCEACRRGDLEVVKSLVENYN 76
>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 773
Score = 26.6 bits (56), Expect = 3.2
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 389 VVTFTSIKLRNTVSSNHGSETVFLSVLVKNGGLIVNLSLPI 511
++TFT K + + T +++VL+K G IV +LPI
Sbjct: 359 ILTFTCYKSSLKKMNQNSQLTGYIAVLLKKGLAIVPYTLPI 399
>SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 348
Score = 26.2 bits (55), Expect = 4.3
Identities = 25/87 (28%), Positives = 32/87 (36%), Gaps = 4/87 (4%)
Frame = -3
Query: 486 RPPFLTSTDKKTVSEPWFEETV--FLSFIDVNVTTQDNFHVARIVQKDEE--TGSYPDLN 319
RPPF+T D T W + F+S I NV T H Q+D T
Sbjct: 225 RPPFITQCDTATGDNYWAGTYMGDFVSNI-TNVLTNSTGHYCTTQQEDNASLTALTRASF 283
Query: 318 DGFVIVVSALLNYVSEDVSRSTTNSRA 238
DG V + ++ D R N A
Sbjct: 284 DGLVNINRVVIMRSGSDFDRGAGNITA 310
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 26.2 bits (55), Expect = 4.3
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = +2
Query: 20 LLASSWTYKDLNMSYTNAENVVPTSTFSAINLFYVLLVPAVILWYAYWRMSRRRLYELAD 199
+L+ S YK L+ N NV +T S I LF+ + + + +W+ R L L D
Sbjct: 243 VLSDSEFYKSLS----NLVNVWLKTTRSLIKLFHDQISKTALEEFNFWQFYYRSLSRLND 298
Query: 200 KLN 208
+L+
Sbjct: 299 QLH 301
>SPAC1F5.08c |yam8|ehs1|calcium transport
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 486
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 395 TFTSIKLRNTVSSNHGSETVFLSVLVKNGGLIVNLSLPI 511
T+TS+ L NT++ N ++ L G N+SL +
Sbjct: 26 TYTSLLLNNTINGNINDQSTAYYNLTWEGNTAYNVSLTL 64
>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1098
Score = 25.4 bits (53), Expect = 7.5
Identities = 14/54 (25%), Positives = 29/54 (53%)
Frame = +1
Query: 268 IFRNIVQKSADYDHESVVKIWIGPRLLVFLYDPRDVEVILSSHVYIDKAEEYRF 429
+ ++++ K+ +E+ V+ + +L+ DVE + S +YID E+Y F
Sbjct: 485 VMQSLLSKATSATNENSVRAFWAFMVLL----KSDVETVDSLEMYIDSLEQYSF 534
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 25.4 bits (53), Expect = 7.5
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +2
Query: 410 KLRNTVSSNHGSETVFLSVLVKNGGL 487
K+++ ++S HG TV S+L+ N G+
Sbjct: 55 KVKDYIAS-HGGHTVITSILIANNGI 79
>SPAC1952.07 |rad1||checkpoint clamp complex protein
Rad1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 323
Score = 25.4 bits (53), Expect = 7.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 579 LKKEASNFDCHDYMSECTVEI 641
LK+ S C D+ ECT+EI
Sbjct: 9 LKQIQSTLRCIDFSKECTIEI 29
>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 521
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 279 VSEDVSRSTTNSRAFPSNGSPGGPFNLSASSYN 181
+SE V S T+S + PS+ P FN+S S N
Sbjct: 461 ISESVVYSYTSSSSMPSSAIPS--FNISLISQN 491
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 25.0 bits (52), Expect = 9.9
Identities = 27/81 (33%), Positives = 32/81 (39%), Gaps = 2/81 (2%)
Frame = -3
Query: 453 TVSEP--WFEETVFLSFIDVNVTTQDNFHVARIVQKDEETGSYPDLNDGFVIVVSALLNY 280
T SEP + E F SF+D N Q F + E GS G V S N
Sbjct: 272 TPSEPSSFPENGGFPSFVDANTHEQTLFPSSATNSFSFEHGSAGFPIPGSVPSTSYHANT 331
Query: 279 VSEDVSRSTTNSRAFPSNGSP 217
SED S+ NS+ SP
Sbjct: 332 ASEDGFSSSYNSQGLFGISSP 352
>SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 124
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -1
Query: 188 HTTAALTFASRRTRGLRPAQVTHRR 114
HT AA+ A RG R V HR+
Sbjct: 42 HTAAAVKEAFSENRGFRTCHVCHRK 66
>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 374
Score = 25.0 bits (52), Expect = 9.9
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -3
Query: 423 VFLSFIDVNVTTQDNFHVARIVQKDE 346
+F + D+N+ + HV +++QKDE
Sbjct: 31 LFKKYDDINLIKEAYNHVHKLIQKDE 56
>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 825
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -1
Query: 269 MSADPRRIPGRSRVTEVLEARLICQ 195
M DP + R RVTEVL L CQ
Sbjct: 474 MQTDPELMAKRGRVTEVLSEHL-CQ 497
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,586,328
Number of Sequences: 5004
Number of extensions: 51060
Number of successful extensions: 168
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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