Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20514
(668 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_55784| Best HMM Match : CUB (HMM E-Value=3.1e-25) 30 1.5
SB_51668| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_6244| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_36891| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_58979| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_53864| Best HMM Match : Herpes_US9 (HMM E-Value=2) 28 6.0
SB_22799| Best HMM Match : OAR (HMM E-Value=3.1) 28 7.9
SB_15342| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_8405| Best HMM Match : PAN (HMM E-Value=0.044) 28 7.9
SB_8320| Best HMM Match : p450 (HMM E-Value=0) 28 7.9
>SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1741
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = +3
Query: 495 TYRSQFHLNVLKSFIELFNANSRAVVDKLKKEASN---FDCHDYMSECTVEILLETAMGV 665
T F + +KS + L N ++ K++K A FD Y TVEI+L G+
Sbjct: 151 TLSPTFTAHNMKSMVPLINVPCDTLMKKIEKAAETGETFDIVKYQQAVTVEIILSIVFGI 210
>SB_55784| Best HMM Match : CUB (HMM E-Value=3.1e-25)
Length = 418
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/58 (27%), Positives = 34/58 (58%)
Frame = -3
Query: 399 NVTTQDNFHVARIVQKDEETGSYPDLNDGFVIVVSALLNYVSEDVSRSTTNSRAFPSN 226
NVT+ D F ++R + E G++ L + V++V ++ ++S +S S+++S S+
Sbjct: 270 NVTSLDTFDLSRNLLTKLENGAFDGLTNLNVLIVIIII-FISSSLSSSSSSSSTLSSS 326
>SB_51668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 203
Score = 30.3 bits (65), Expect = 1.5
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 462 DKKTVSEPWFEETVFLSFIDVNVTTQ 385
D T+++PW T+ F+D+N TQ
Sbjct: 44 DTYTITQPWISYTITQPFLDINTITQ 69
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -3
Query: 501 DKFTMRPPFLTSTDKKTVSEPWFEETVFLSFIDVNVTTQ 385
D +T+ P+++ T ++ PW T+ F+D+N TQ
Sbjct: 116 DTYTITQPWISYT----ITHPWISYTISQPFLDINTITQ 150
>SB_6244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 394
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +1
Query: 424 RFFKPWLGNGLLIS-TGQKWRSHRKLIAP 507
RFF+ LG L+ +G W+ HR+LI+P
Sbjct: 97 RFFQNVLGQFSLVGLSGDLWKKHRRLISP 125
>SB_36891| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2124
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = -1
Query: 215 EARLICQQAHTTAALTFASRRTRGLRPAQVTHRRG*SQKT 96
E RLI Q+ AL A R GL P + T R+G S +T
Sbjct: 167 EFRLILQEQERYYALKAAIRARHGLAPREKTSRKGPSLET 206
>SB_58979| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 534
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Frame = +2
Query: 50 LNMSYTNAENVVPTSTFSAINLFYVLLVPAVILWYAYWRMSRRRL--YELADKLN 208
+ +S+T+ + +A+ LF LV +I+ ++ W++SR R+ YE + K++
Sbjct: 160 VGLSFTSYSTIFGFIGVTAVLLFVFGLVMYIIVQHSLWKLSRPRVNPYENSTKIS 214
>SB_53864| Best HMM Match : Herpes_US9 (HMM E-Value=2)
Length = 615
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = -1
Query: 215 EARLICQQAHTTAALTFASRRTRGLRPAQVTHRRG*SQKT 96
E RLI Q+ AL A R GL P + R+G S KT
Sbjct: 555 EFRLILQEQERYYALKAAIRARHGLAPREKKSRKGPSLKT 594
>SB_22799| Best HMM Match : OAR (HMM E-Value=3.1)
Length = 146
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -1
Query: 215 EARLICQQAHTTAALTFASRRTRGLRPAQVTHRRG*SQKT 96
E RLI Q+ AL A R GL P++ R+G S +T
Sbjct: 82 EFRLILQEQERYYALKAAIRARHGLAPSEKKRRKGPSLET 121
>SB_15342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1434
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Frame = -3
Query: 396 VTTQDNFHVARIVQKDEETGSYPDLNDGFVIVVSALLNYVSEDVSRSTTNSRAFPSNGSP 217
V DN + +++D + G+Y D + + L + D+ S + S G P
Sbjct: 684 VNIVDNAPLVNFIRQDTDNGTYSYNQDEMAVRIWYLFGRLQFDLVNSASQSFCTLYLGDP 743
Query: 216 --GGPFNLSASSYNR 178
GG + +SYN+
Sbjct: 744 TFGGGWRFVIASYNQ 758
>SB_8405| Best HMM Match : PAN (HMM E-Value=0.044)
Length = 387
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +3
Query: 153 TPTGECQGGGCMSLLTN*TGLQDFRYSGTPWNS 251
T G C GGG ++ Q F YS WNS
Sbjct: 168 TDLGSCGGGGWTLVMKIDGNKQTFSYSSPKWNS 200
>SB_8320| Best HMM Match : p450 (HMM E-Value=0)
Length = 1207
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Frame = +1
Query: 346 LVFLYDPRDVEVILSSHVYIDKA------EEYRFFKPWLGNGLLISTGQKWRSHRKLIA 504
+V + DP DV+++L S K ++YR + + GL + G++W HR +++
Sbjct: 782 VVSISDPDDVQMVLRSESKFPKRSLLPLIDQYRQLRQ-VPPGLAFAVGEEWYKHRTVLS 839
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,302,946
Number of Sequences: 59808
Number of extensions: 387387
Number of successful extensions: 1045
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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