Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20513
(675 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 151 2e-35
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 151 2e-35
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 138 2e-31
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 118 1e-30
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 117 3e-25
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 113 3e-24
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 111 1e-23
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 110 3e-23
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 110 3e-23
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 107 2e-22
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 95 2e-18
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 83 5e-15
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 63 7e-09
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 62 9e-09
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 61 3e-08
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 58 3e-07
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 55 1e-06
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 55 2e-06
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 55 2e-06
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 54 2e-06
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 54 2e-06
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 54 4e-06
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 51 2e-05
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 48 3e-04
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 48 3e-04
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 47 5e-04
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 46 8e-04
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 43 0.006
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 43 0.006
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 41 0.032
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 39 0.096
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 37 0.51
UniRef50_Q7U147 Cluster: PROBABLE OXIDASE; n=7; Mycobacterium tu... 35 1.6
UniRef50_A0LVR4 Cluster: ATPases involved in chromosome partitio... 35 2.1
UniRef50_Q57WH1 Cluster: Putative uncharacterized protein; n=6; ... 35 2.1
UniRef50_Q890E3 Cluster: Acetyltransferase (GNAT) family; n=1; L... 34 2.7
UniRef50_A6E8K7 Cluster: Putative uncharacterized protein; n=1; ... 34 3.6
UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n... 34 3.6
UniRef50_O28859 Cluster: Surface layer protein B; n=1; Archaeogl... 34 3.6
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 151 bits (366), Expect = 2e-35
Identities = 66/84 (78%), Positives = 74/84 (88%)
Frame = +1
Query: 250 KGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 429
K DGKVRTDPTYPAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+
Sbjct: 71 KVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQ 130
Query: 430 TGPKNVPYLVTHDGRTIRYPDPLI 501
G K VP+LVTHDGRTIRYPDPLI
Sbjct: 131 LGAKGVPFLVTHDGRTIRYPDPLI 154
Score = 119 bits (286), Expect = 7e-26
Identities = 55/64 (85%), Positives = 58/64 (90%)
Frame = +3
Query: 42 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 221
MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G E
Sbjct: 1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAE 60
Query: 222 S*KL 233
K+
Sbjct: 61 VTKI 64
Score = 74.1 bits (174), Expect = 3e-12
Identities = 32/45 (71%), Positives = 39/45 (86%)
Frame = +3
Query: 486 PRPTYQSHDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGT 620
P P ++DS+Q+DIA+ KI D+IKF+SGNLCMITGGRNLGRVGT
Sbjct: 150 PDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGT 194
Score = 45.6 bits (103), Expect = 0.001
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = +2
Query: 602 LGACGHIVSRERHPGSFDIVHIKD 673
LG G +V+RERHPGSFDIVHIKD
Sbjct: 189 LGRVGTVVNRERHPGSFDIVHIKD 212
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 151 bits (366), Expect = 2e-35
Identities = 67/86 (77%), Positives = 75/86 (87%)
Frame = +1
Query: 250 KGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 429
K DGKVRTD TYPAGFMDV+SI+KT E FRLIYD KGRF +HRITPEEAKYKLCKV+++
Sbjct: 71 KIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIF 130
Query: 430 TGPKNVPYLVTHDGRTIRYPDPLIKV 507
G K +P+LVTHD RTIRYPDPLIKV
Sbjct: 131 VGTKGIPHLVTHDARTIRYPDPLIKV 156
Score = 120 bits (289), Expect = 3e-26
Identities = 54/64 (84%), Positives = 59/64 (92%)
Frame = +3
Query: 42 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 221
MARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+E
Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
Query: 222 S*KL 233
K+
Sbjct: 61 VKKI 64
Score = 66.5 bits (155), Expect = 6e-10
Identities = 27/44 (61%), Positives = 36/44 (81%)
Frame = +3
Query: 486 PRPTYQSHDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 617
P P + +D+IQ+D+ T KI DFIKF++GNLCM+TGG NLGR+G
Sbjct: 150 PDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIG 193
Score = 43.2 bits (97), Expect = 0.006
Identities = 17/24 (70%), Positives = 20/24 (83%)
Frame = +2
Query: 602 LGACGHIVSRERHPGSFDIVHIKD 673
LG G I +RERHPGSFD+VH+KD
Sbjct: 189 LGRIGVITNRERHPGSFDVVHVKD 212
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 138 bits (333), Expect = 2e-31
Identities = 62/83 (74%), Positives = 69/83 (83%)
Frame = +1
Query: 256 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 435
DGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G
Sbjct: 73 DGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFG 132
Query: 436 PKNVPYLVTHDGRTIRYPDPLIK 504
K +PYL T+DGRTIRYPDPLIK
Sbjct: 133 QKGIPYLNTYDGRTIRYPDPLIK 155
Score = 109 bits (261), Expect = 8e-23
Identities = 48/60 (80%), Positives = 53/60 (88%)
Frame = +3
Query: 42 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 221
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60
Score = 57.6 bits (133), Expect = 3e-07
Identities = 24/44 (54%), Positives = 34/44 (77%)
Frame = +3
Query: 486 PRPTYQSHDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 617
P P + +D+I+LD+ KI++FIKF+ GN+ M+TGGRN GRVG
Sbjct: 150 PDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVG 193
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 118 bits (284), Expect = 1e-25
Identities = 53/63 (84%), Positives = 58/63 (92%)
Frame = +3
Query: 45 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES 224
ARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+E
Sbjct: 2 ARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEV 61
Query: 225 *KL 233
K+
Sbjct: 62 KKI 64
Score = 89.4 bits (212), Expect(2) = 1e-30
Identities = 41/50 (82%), Positives = 44/50 (88%)
Frame = +1
Query: 250 KGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 399
K DGKVRTD TYP GFMDV+SI+KT E FRLIYDVKGRFT+HRIT EEAK
Sbjct: 71 KIDGKVRTDITYPTGFMDVISIDKTGEHFRLIYDVKGRFTVHRITAEEAK 120
Score = 66.5 bits (155), Expect(2) = 1e-30
Identities = 27/37 (72%), Positives = 32/37 (86%)
Frame = +1
Query: 397 KYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKV 507
+YKLCKVK++ G K +P+LVTHD RTIRYPDPLIKV
Sbjct: 152 QYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPLIKV 188
Score = 60.9 bits (141), Expect = 3e-08
Identities = 23/44 (52%), Positives = 35/44 (79%)
Frame = +3
Query: 486 PRPTYQSHDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 617
P P + +D++++D+ T KI DFIKF++ N+CM+TGG NLGR+G
Sbjct: 182 PDPLIKVNDTVRIDLDTGKITDFIKFDTSNMCMVTGGANLGRIG 225
Score = 43.2 bits (97), Expect = 0.006
Identities = 17/24 (70%), Positives = 20/24 (83%)
Frame = +2
Query: 602 LGACGHIVSRERHPGSFDIVHIKD 673
LG G I +RERHPGSFD+VH+KD
Sbjct: 221 LGRIGVITNRERHPGSFDVVHVKD 244
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 117 bits (281), Expect = 3e-25
Identities = 51/84 (60%), Positives = 63/84 (75%)
Frame = +1
Query: 256 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 435
DGKVR D YP G MDVV IEKT++ FR++YD KGRF + ++ EEAKYKL KV A G
Sbjct: 185 DGKVRRDKGYPTGLMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIG 244
Query: 436 PKNVPYLVTHDGRTIRYPDPLIKV 507
P +PY+VTHD RTIR+P+P IK+
Sbjct: 245 PNQIPYIVTHDSRTIRFPNPEIKI 268
Score = 62.1 bits (144), Expect = 1e-08
Identities = 39/88 (44%), Positives = 48/88 (54%), Gaps = 29/88 (32%)
Frame = +3
Query: 45 ARGPKKHLKRLNAPKAWMLDKLGG-------------------------VYAPRPSTGP- 146
ARGPKKHLKR+NAPK+WML+KLGG +Y + +T P
Sbjct: 83 ARGPKKHLKRINAPKSWMLNKLGGIWVITFFAFRLRKNDFITTIPKLKFIYFKKQATRPS 142
Query: 147 ---HKLRECLPLVIFLRNRLKYALTGNE 221
HKLRE LPL + L+ RL YAL G +
Sbjct: 143 QGPHKLRESLPLSVLLKERLNYALNGRD 170
Score = 46.0 bits (104), Expect = 8e-04
Identities = 19/44 (43%), Positives = 27/44 (61%)
Frame = +3
Query: 486 PRPTYQSHDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 617
P P + D+++ D+ KI +F ESGN+C I G N+GRVG
Sbjct: 262 PNPEIKIGDTLKYDLVNNKIENFAHLESGNVCYIQQGNNIGRVG 305
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 113 bits (273), Expect = 3e-24
Identities = 50/83 (60%), Positives = 65/83 (78%)
Frame = +1
Query: 256 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 435
DGKVR D +PAG MDV+SI+ T E +R++YD G F +HRIT +E+ +KLCKV RV+ G
Sbjct: 73 DGKVRADKNFPAGVMDVISIKTTKENYRVLYDNVGHFFLHRITIKESMFKLCKVIRVSIG 132
Query: 436 PKNVPYLVTHDGRTIRYPDPLIK 504
K +PY+VTHDGRTIR+P+ LIK
Sbjct: 133 SKGIPYIVTHDGRTIRFPNLLIK 155
Score = 89.4 bits (212), Expect = 7e-17
Identities = 38/61 (62%), Positives = 49/61 (80%)
Frame = +3
Query: 42 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 221
M+RG KKH KRLNAPK W+L+KLGG++APR S+GPHK + +PLVI +RN+LKY+ E
Sbjct: 1 MSRGIKKHYKRLNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRE 60
Query: 222 S 224
S
Sbjct: 61 S 61
Score = 52.0 bits (119), Expect = 1e-05
Identities = 21/44 (47%), Positives = 31/44 (70%)
Frame = +3
Query: 486 PRPTYQSHDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 617
P +S+DSI LD+ K++DFIKF G+LC++ G N+GR+G
Sbjct: 150 PNLLIKSNDSIVLDLLNNKVIDFIKFSIGSLCVVIKGSNIGRIG 193
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 111 bits (267), Expect = 1e-23
Identities = 48/86 (55%), Positives = 63/86 (73%)
Frame = +1
Query: 250 KGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 429
K DGKVRT+ YP G MDV+ + K+NELFR+IYD KGRF +H I +EA +KL +V +
Sbjct: 85 KVDGKVRTNYRYPTGLMDVIELGKSNELFRIIYDCKGRFCVHHIEAKEASFKLLRVNQFK 144
Query: 430 TGPKNVPYLVTHDGRTIRYPDPLIKV 507
G K +P++VTHDGRTI Y DP ++V
Sbjct: 145 IGAKGIPHVVTHDGRTISYVDPSVRV 170
Score = 87.0 bits (206), Expect = 4e-16
Identities = 43/70 (61%), Positives = 49/70 (70%)
Frame = +3
Query: 15 SFSI*YLSNMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNR 194
SFS L M R + HLKRL AP W+L K G +A PSTGPHKLRECLP+ IFLR+R
Sbjct: 6 SFSWSVLFLMPRCQRFHLKRLTAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIFLRDR 65
Query: 195 LKYALTGNES 224
LKYALT E+
Sbjct: 66 LKYALTAKEA 75
Score = 46.0 bits (104), Expect = 8e-04
Identities = 18/43 (41%), Positives = 31/43 (72%)
Frame = +3
Query: 492 PTYQSHDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGT 620
P+ + HD+++ +I T ++ IKF+ G++ M+T G N+GRVGT
Sbjct: 166 PSVRVHDALKFNIKTGEVESVIKFKVGDVAMVTAGGNVGRVGT 208
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 110 bits (265), Expect = 3e-23
Identities = 49/64 (76%), Positives = 55/64 (85%)
Frame = +3
Query: 42 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 221
MA P+KHLK + APK WMLDKL GV+AP PSTGPHKLRECLPL+IFLRNRLKYALTG+E
Sbjct: 1 MAHSPRKHLKHVAAPKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
Query: 222 S*KL 233
K+
Sbjct: 61 VKKI 64
Score = 90.6 bits (215), Expect = 3e-17
Identities = 38/53 (71%), Positives = 45/53 (84%)
Frame = +1
Query: 349 DVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKV 507
D KGRF +HRITPEEAKYKL KV+++ G K +P+LVTHD RTIRYPDPLIK+
Sbjct: 76 DTKGRFAVHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKM 128
Score = 65.3 bits (152), Expect = 1e-09
Identities = 26/44 (59%), Positives = 35/44 (79%)
Frame = +3
Query: 486 PRPTYQSHDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 617
P P + +D+IQ+D+ T KI DF KF++GNLCM+TGG NLGR+G
Sbjct: 122 PDPLIKMNDTIQIDLETGKITDFFKFDTGNLCMVTGGTNLGRIG 165
Score = 41.1 bits (92), Expect = 0.024
Identities = 16/24 (66%), Positives = 19/24 (79%)
Frame = +2
Query: 602 LGACGHIVSRERHPGSFDIVHIKD 673
LG G I +RE HPGSFD+VH+KD
Sbjct: 161 LGRIGVITNRENHPGSFDVVHVKD 184
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 110 bits (265), Expect = 3e-23
Identities = 48/82 (58%), Positives = 62/82 (75%)
Frame = +1
Query: 250 KGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 429
K DGK+RTD YP GFMDV+SI +T E FRL+Y+ K RF + +T E+AK+KLCK+++
Sbjct: 71 KIDGKIRTDTRYPVGFMDVLSIPRTKENFRLMYNTKRRFCLVPLTAEQAKFKLCKIEKRV 130
Query: 430 TGPKNVPYLVTHDGRTIRYPDP 495
G +PY+VTHDGRTIRYP P
Sbjct: 131 LGTGAIPYIVTHDGRTIRYPHP 152
Score = 101 bits (241), Expect = 2e-20
Identities = 42/60 (70%), Positives = 49/60 (81%)
Frame = +3
Query: 42 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 221
MARGP+ HLKRLNAP WML KLGG +AP+PS GPH ++ECLPL++ LRNRL YAL G E
Sbjct: 1 MARGPRHHLKRLNAPHHWMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYALNGRE 60
Score = 55.2 bits (127), Expect = 1e-06
Identities = 22/44 (50%), Positives = 33/44 (75%)
Frame = +3
Query: 486 PRPTYQSHDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 617
P P Q++D+I+L++ T KI+DF+KF+ GN M+ GG +GRVG
Sbjct: 150 PHPELQANDTIKLNLETGKIVDFVKFDIGNTAMMIGGNGMGRVG 193
Score = 39.5 bits (88), Expect = 0.073
Identities = 17/24 (70%), Positives = 19/24 (79%)
Frame = +2
Query: 602 LGACGHIVSRERHPGSFDIVHIKD 673
+G G IV RE HPGSF+IVHIKD
Sbjct: 189 MGRVGVIVKREVHPGSFEIVHIKD 212
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 107 bits (257), Expect = 2e-22
Identities = 48/86 (55%), Positives = 61/86 (70%)
Frame = +1
Query: 250 KGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 429
K DGK+RTD P MDV+SI+K E F LIY + RF +HRITPEE KYKLCK++++
Sbjct: 81 KVDGKIRTDNNLPYWIMDVISIDKMGEDFCLIYGINRRFALHRITPEEVKYKLCKMRKIF 140
Query: 430 TGPKNVPYLVTHDGRTIRYPDPLIKV 507
K +P+LV HD T+R+PD LIKV
Sbjct: 141 VRAKGIPHLVIHDIHTVRHPDSLIKV 166
Score = 97.1 bits (231), Expect = 3e-19
Identities = 47/67 (70%), Positives = 56/67 (83%)
Frame = +3
Query: 33 LSNMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALT 212
++ +A GPK+HLKR+ A + WMLDKL GV+A RPSTGPHKLRECLP IFLRNRLKYALT
Sbjct: 9 ITAVAFGPKQHLKRVAALQHWMLDKLTGVFAARPSTGPHKLRECLP-HIFLRNRLKYALT 67
Query: 213 GNES*KL 233
G+E K+
Sbjct: 68 GDEVKKI 74
Score = 48.4 bits (110), Expect = 2e-04
Identities = 21/44 (47%), Positives = 32/44 (72%)
Frame = +3
Query: 486 PRPTYQSHDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 617
P + +D+IQ+D+ T KI +KF++GNLC++TGG N GR+G
Sbjct: 160 PDSLIKVNDTIQIDLETGKITA-LKFDTGNLCLVTGGGNWGRIG 202
Score = 34.3 bits (75), Expect = 2.7
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = +2
Query: 605 GACGHIVSRERHPGSFDIVHIKD 673
G G I +RERHP SFD H+KD
Sbjct: 199 GRIGVITNRERHPVSFDTFHVKD 221
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 94.7 bits (225), Expect = 2e-18
Identities = 45/80 (56%), Positives = 52/80 (65%)
Frame = +1
Query: 256 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 435
D R D YPAGFMDVV I KT + FRL+YDVKGRF + ++ EA+ KL KV + T
Sbjct: 70 DNHPRRDGKYPAGFMDVVEIPKTGDRFRLMYDVKGRFALVNLSEAEAQIKLMKVVNLYTA 129
Query: 436 PKNVPYLVTHDGRTIRYPDP 495
VP VTHDG IRYPDP
Sbjct: 130 TGRVPVAVTHDGHRIRYPDP 149
Score = 94.3 bits (224), Expect = 2e-18
Identities = 41/55 (74%), Positives = 45/55 (81%)
Frame = +3
Query: 57 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 221
KKHLKRL APK WML KL GV+APRP GPHKLRECLPL++ +RNRLKYAL E
Sbjct: 3 KKHLKRLYAPKDWMLSKLTGVFAPRPRPGPHKLRECLPLLVIIRNRLKYALNARE 57
Score = 35.5 bits (78), Expect = 1.2
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +3
Query: 486 PRPTYQSHDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 617
P P D+I ++ K +D IK G ++TGG N GR+G
Sbjct: 147 PDPHTSIGDTIVYNVKEKKCVDLIKNRQGKAVIVTGGANRGRIG 190
Score = 32.7 bits (71), Expect = 8.4
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +2
Query: 605 GACGHIVSRERHPGSFDIVHIKD 673
G G IV E HPG+F+I H+KD
Sbjct: 187 GRIGEIVKVECHPGAFNIAHLKD 209
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 83.4 bits (197), Expect = 5e-15
Identities = 40/84 (47%), Positives = 58/84 (69%)
Frame = +1
Query: 250 KGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 429
K +G+VRT+ +P G DVVSIEKT E FR++Y+V +F +HRI+ EEA Y+L KV +
Sbjct: 71 KVNGRVRTNSHFPVGLFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKVTKKY 130
Query: 430 TGPKNVPYLVTHDGRTIRYPDPLI 501
+ +PY+V+ G +IR+ DP I
Sbjct: 131 EN-QGIPYIVSSCGLSIRFCDPAI 153
Score = 68.1 bits (159), Expect = 2e-10
Identities = 29/55 (52%), Positives = 37/55 (67%)
Frame = +3
Query: 42 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 206
M G + HLKR APK+WMLDK GG +A P++GPHK EC+PL + L+YA
Sbjct: 1 MPTGHRDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYA 55
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 62.9 bits (146), Expect = 7e-09
Identities = 28/62 (45%), Positives = 40/62 (64%)
Frame = +3
Query: 48 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES* 227
+GP+KHLKRL AP W L + + RPS GPH + + LPL++ +R+ LKYA E+
Sbjct: 4 KGPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAK 63
Query: 228 KL 233
K+
Sbjct: 64 KI 65
Score = 46.4 bits (105), Expect = 6e-04
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Frame = +1
Query: 256 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV--KRVA 429
DG R + +PAG MDV+SI + +E + +++D GR ++ + ++ KLCK+ K V
Sbjct: 74 DGLKRKEYKHPAGLMDVLSIPEMDETYLVLFDESGRISLKK--TDKTDVKLCKIVNKTVV 131
Query: 430 TGPKNVPYLVTHDGR 474
G N+ L HDGR
Sbjct: 132 KG-GNI-QLNLHDGR 144
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 62.5 bits (145), Expect = 9e-09
Identities = 30/62 (48%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Frame = +3
Query: 51 GPKKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES* 227
GPK+H+KRL AP AW + K GG +APRP GPH + +PL+I +R+ L YA E+
Sbjct: 7 GPKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREAR 66
Query: 228 KL 233
K+
Sbjct: 67 KI 68
Score = 56.4 bits (130), Expect = 6e-07
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Frame = +1
Query: 256 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 435
DG VR +P +P G MDVV I +T + +R++ + R + I+ EEA+ K+C++K
Sbjct: 77 DGVVRKEPKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYV 136
Query: 436 PKNVPYLVTHDGRT--IRYPDP 495
+ HDG+ + DP
Sbjct: 137 RGGNLQITMHDGKNWLVEIEDP 158
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 60.9 bits (141), Expect = 3e-08
Identities = 29/75 (38%), Positives = 45/75 (60%)
Frame = +1
Query: 256 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 435
DG+V D +P GFMD++ I KT E++R++ D KGR +++I EE KLCK+ +T
Sbjct: 74 DGRVIKDYKFPVGFMDIIEIPKTGEVYRVLLDKKGRLQLNKI--EENDSKLCKIVNKSTI 131
Query: 436 PKNVPYLVTHDGRTI 480
+ HDG+ +
Sbjct: 132 KGGKIQVNLHDGKNV 146
Score = 46.4 bits (105), Expect = 6e-04
Identities = 21/66 (31%), Positives = 34/66 (51%)
Frame = +3
Query: 51 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*K 230
G +KHLK APK W + + +PS G H + L L + +R+ LK A E+ +
Sbjct: 5 GSRKHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKR 64
Query: 231 L*NNAS 248
+ N+ +
Sbjct: 65 IINSGN 70
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 57.6 bits (133), Expect = 3e-07
Identities = 33/86 (38%), Positives = 44/86 (51%)
Frame = +1
Query: 250 KGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 429
K DGK + + GFMDV+ I E +R++Y+ +G + + T E A KL KV+
Sbjct: 67 KVDGKTVREKKFAVGFMDVIEIN--GESYRVVYNDQGALVLMKETKERASMKLLKVRSKV 124
Query: 430 TGPKNVPYLVTHDGRTIRYPDPLIKV 507
P N L THDGRT D KV
Sbjct: 125 IAPGNRIQLGTHDGRTFITDDKSKKV 150
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 55.2 bits (127), Expect = 1e-06
Identities = 27/75 (36%), Positives = 39/75 (52%)
Frame = +1
Query: 256 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 435
DG+V TD +P G MDV+ I + +R++ D + I PEEA YKL +++R T
Sbjct: 76 DGRVVTDYKFPVGLMDVLHIIPEEKYYRVVPDPARKLRFVEIKPEEAGYKLAQIRRKMTV 135
Query: 436 PKNVPYLVTHDGRTI 480
HDGR +
Sbjct: 136 KNGDLQFTLHDGRNV 150
Score = 46.8 bits (106), Expect = 5e-04
Identities = 22/64 (34%), Positives = 34/64 (53%)
Frame = +3
Query: 33 LSNMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALT 212
+ +G +HL+R AP W + + V+ +PS GPH L +P+ I LR+ YA T
Sbjct: 1 MGRKVKGSLRHLRRSVAPPFWPIKRKEYVWTVKPSPGPHSLLSSIPIGIVLRDVFGYAKT 60
Query: 213 GNES 224
E+
Sbjct: 61 MKEA 64
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 54.8 bits (126), Expect = 2e-06
Identities = 30/77 (38%), Positives = 38/77 (49%)
Frame = +1
Query: 250 KGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 429
K DGKVR D YP G MDV+ + NE +R+I D RI EA K+C+++
Sbjct: 66 KVDGKVRRDYKYPVGLMDVIELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIEDKT 125
Query: 430 TGPKNVPYLVTHDGRTI 480
L HDGR I
Sbjct: 126 MVKAGKIQLNLHDGRNI 142
Score = 47.2 bits (107), Expect = 4e-04
Identities = 19/54 (35%), Positives = 32/54 (59%)
Frame = +3
Query: 63 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES 224
HL+R +P+ W +++ G ++ +PS GPH +PL + LR+ YA T E+
Sbjct: 3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREA 56
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 54.8 bits (126), Expect = 2e-06
Identities = 34/83 (40%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Frame = +1
Query: 256 DGKVRTDPTYPAGFMDVVSIEKTNELFRLI-YDVKGRFTIHRITPEEAKYKLCKVKRVAT 432
DG VR D +P GFMDV+ + T E FR++ Y VK F +H I EE K +++ T
Sbjct: 74 DGVVRKDYKFPVGFMDVIEVVDTGEKFRMLPYPVK-FFKLHPIPEEEGDLKPVRIENKTT 132
Query: 433 GPKNVPYLVTHDGRTI--RYPDP 495
L HDGR I R DP
Sbjct: 133 VKGGHVQLNLHDGRNILVRVKDP 155
Score = 50.4 bits (115), Expect = 4e-05
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Frame = +3
Query: 42 MAR-GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGN 218
MAR G ++ LK L AP+ W + + +A +P GPH + LPL++ +RN L YA T
Sbjct: 1 MARMGGQRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAR 60
Query: 219 ES*KL 233
E+ KL
Sbjct: 61 EARKL 65
Score = 39.9 bits (89), Expect = 0.055
Identities = 18/49 (36%), Positives = 30/49 (61%)
Frame = +3
Query: 471 PHHPLPRPTYQSHDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 617
P +P+ Y++ D++ + + +I IKF G + +I GGRN+GRVG
Sbjct: 155 PRNPV-EDVYRTMDTLLITVPGQEIKGHIKFGEGAIAIIVGGRNVGRVG 202
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 54.4 bits (125), Expect = 2e-06
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Frame = +1
Query: 250 KGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VKRV 426
K DG++ D +P GFMDV+SI+ + ++YD KG+ I + P KL K VK+
Sbjct: 68 KVDGRIVKDRRFPVGFMDVLSIDTLENDYIIVYDRKGKLVIRQNAPGNKGLKLFKVVKKT 127
Query: 427 ATGPKNVPYLVTHDGRTI 480
G + L HDG+TI
Sbjct: 128 IIGTGKI-QLGFHDGKTI 144
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 54.4 bits (125), Expect = 2e-06
Identities = 27/55 (49%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Frame = +3
Query: 63 HLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES 224
HL+R AP W + K GGV+ RPS GPH L LPL + +R+ LKYA T +E+
Sbjct: 3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEA 57
Score = 51.2 bits (117), Expect = 2e-05
Identities = 28/77 (36%), Positives = 40/77 (51%)
Frame = +1
Query: 250 KGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 429
K DG VR D +P G MDV+ I T E++R++ D + + I+ EEA KL +V+
Sbjct: 67 KVDGVVRRDYKFPVGLMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRVEGKT 126
Query: 430 TGPKNVPYLVTHDGRTI 480
L HDGR +
Sbjct: 127 MVKGGRIQLHFHDGRNL 143
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 53.6 bits (123), Expect = 4e-06
Identities = 31/75 (41%), Positives = 37/75 (49%)
Frame = +1
Query: 256 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 435
DGKVR D YP G MDVV I + R+I D T I+ E+AKYK ++ T
Sbjct: 68 DGKVRRDYKYPVGLMDVVEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIMNKTTL 127
Query: 436 PKNVPYLVTHDGRTI 480
V L DGR I
Sbjct: 128 KSGVLQLNLEDGRNI 142
Score = 35.1 bits (77), Expect = 1.6
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = +3
Query: 63 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES 224
H+ R AP + K + R GPHK++E +PL I L+ LK T E+
Sbjct: 3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREA 56
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 51.2 bits (117), Expect = 2e-05
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Frame = +1
Query: 256 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VKRVAT 432
DG+ D +P G DV++I + NE +R++ D +G+ + +I EEA K K +++V+
Sbjct: 74 DGRPIKDYKFPVGLFDVLAIPEINEYYRVLLDERGKLYLKKIDKEEANIKYGKIIRKVSV 133
Query: 433 GPKNVPYLVTHDGRT 477
+ Y +T DGRT
Sbjct: 134 RGGKIQYTLT-DGRT 147
Score = 41.5 bits (93), Expect = 0.018
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +3
Query: 57 KKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL 233
K+HL+ L P+ W + K G + +PS GPH +P+ ++LR+ L A E L
Sbjct: 6 KRHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYL 65
Query: 234 *NN 242
NN
Sbjct: 66 LNN 68
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 47.6 bits (108), Expect = 3e-04
Identities = 27/79 (34%), Positives = 40/79 (50%)
Frame = +1
Query: 256 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 435
DG++ TD G MDV+++ + + FR I DV G+ I+ + A KLC+V +T
Sbjct: 70 DGRIETDLGRGVGLMDVLTVGEDS--FRCILDVNGKLRYRSISDKAAASKLCRVMGKSTI 127
Query: 436 PKNVPYLVTHDGRTIRYPD 492
+ HDGR I D
Sbjct: 128 TDGKTQIHLHDGRNILVSD 146
Score = 42.7 bits (96), Expect = 0.008
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +3
Query: 63 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 206
H+KRL P++W L + ++ +P+ G H C+PL + LR+ L A
Sbjct: 5 HMKRLTMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPLGVILRDVLDLA 52
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 47.6 bits (108), Expect = 3e-04
Identities = 24/75 (32%), Positives = 38/75 (50%)
Frame = +1
Query: 256 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 435
DG R D +P G DV+++ NE +R++ D KGR ++++ E KLC++ T
Sbjct: 68 DGISRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLVLYKLN-ETNVNKLCRINNKTTV 126
Query: 436 PKNVPYLVTHDGRTI 480
L +DG I
Sbjct: 127 KGGKIQLNLNDGTNI 141
Score = 39.9 bits (89), Expect = 0.055
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +3
Query: 63 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLK 200
H KRL+ PK+W + + G + GPH LPL + +R+ LK
Sbjct: 3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLK 48
Score = 39.1 bits (87), Expect = 0.096
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +3
Query: 498 YQSHDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTSCPARDI 641
Y + DS+ L I ++ +KFE GNL M+ GG++ G G R++
Sbjct: 147 YGTKDSLILSIPDKHVVKHLKFEVGNLAMVIGGQHSGETGKIMEIREV 194
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 46.8 bits (106), Expect = 5e-04
Identities = 25/75 (33%), Positives = 36/75 (48%)
Frame = +1
Query: 256 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 435
DGKVR D Y G D +SI N +R++ + G+F H + +A K+CK+
Sbjct: 70 DGKVRKDYRYTVGMFDTISIPAINANYRVVIGMDGKF--HLVPVTDASAKICKIVNKTAL 127
Query: 436 PKNVPYLVTHDGRTI 480
L HDG T+
Sbjct: 128 RGGKIQLNLHDGTTM 142
Score = 42.3 bits (95), Expect = 0.010
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = +3
Query: 63 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL 233
HLKR+ AP+ W + + + +P G H +PLV+ LR+ LK A +E K+
Sbjct: 5 HLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKI 61
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 46.0 bits (104), Expect = 8e-04
Identities = 22/84 (26%), Positives = 39/84 (46%)
Frame = +1
Query: 256 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 435
+GK +P MD +S N+ +R++ G+ T++ I E K+CKV ++
Sbjct: 73 NGKKCLSHKFPISLMDTISFPLANKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINA 132
Query: 436 PKNVPYLVTHDGRTIRYPDPLIKV 507
++T D R ++ IKV
Sbjct: 133 SSKNKIIITDDLRELKINYAKIKV 156
Score = 34.3 bits (75), Expect = 2.7
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +3
Query: 510 DSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRV 614
DS+ + +I+ +KFE G+LC+IT G++LG +
Sbjct: 158 DSLLIKTINDEIVYALKFEVGSLCLITRGKHLGTI 192
Score = 32.7 bits (71), Expect = 8.4
Identities = 18/64 (28%), Positives = 33/64 (51%)
Frame = +3
Query: 42 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 221
MA+G KKH KR+++ K G++ + S+GPH + + L+ ++ A E
Sbjct: 1 MAKGIKKHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQE 60
Query: 222 S*KL 233
+ K+
Sbjct: 61 AQKV 64
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 43.2 bits (97), Expect = 0.006
Identities = 19/41 (46%), Positives = 26/41 (63%)
Frame = +3
Query: 498 YQSHDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGT 620
Y + DSI L + K++ IK+E GNL MI GG + G VG+
Sbjct: 148 YNTKDSIILSVPDKKVVKHIKYEVGNLAMIVGGSHAGEVGS 188
Score = 40.7 bits (91), Expect = 0.032
Identities = 18/55 (32%), Positives = 32/55 (58%)
Frame = +1
Query: 256 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK 420
DG R D +P G MD+++I N +R++ D K R ++++ A KLC+++
Sbjct: 69 DGVARKDLRFPVGLMDIITIPLNNVEYRVMLDGKSRLVLNKLDGTGAD-KLCRIE 122
Score = 39.9 bits (89), Expect = 0.055
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 63 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRL 197
H KR++ PK+W + K + GPH + +PL + LR+ L
Sbjct: 4 HQKRISVPKSWQISKKSNKWITSTRPGPHNRLQSIPLAVILRDML 48
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 43.2 bits (97), Expect = 0.006
Identities = 21/59 (35%), Positives = 30/59 (50%)
Frame = +1
Query: 256 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 432
+G+ D G D+VSI K + +R+ DVKG I E AK +LCK++ T
Sbjct: 68 NGRACKDSRMGLGVFDIVSIPKLGKHYRIQLDVKGNLVAIEIPAESAKTRLCKIRNKTT 126
Score = 35.1 bits (77), Expect = 1.6
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = +3
Query: 60 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL 233
K+LKRL AP +W + K + + + GPH LP+ ++LR + A +E K+
Sbjct: 3 KYLKRLVAPGSWHIPKKVQKFVMKTAPGPHN-AGALPVGVWLREHIGLAQNASEVKKI 59
Score = 35.1 bits (77), Expect = 1.6
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Frame = +3
Query: 495 TYQSHDSIQLDIATT-----KIMDFIKFESGNLCMITGGRNLGRVG 617
TY++ DS+ + + T +I+D + GN+ MI GG++ G+VG
Sbjct: 147 TYKAKDSVVVTLGTDGEDRFRIVDHFPYAEGNVAMIVGGKHSGKVG 192
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 40.7 bits (91), Expect = 0.032
Identities = 20/55 (36%), Positives = 31/55 (56%)
Frame = +3
Query: 69 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL 233
KR+ AP AW + + Y S+GPH LP+ I+LR+ +++AL E K+
Sbjct: 5 KRMTAPDAWQIARKESKYVVSTSSGPHD-GSALPIGIWLRDHMQFALNTKEVRKI 58
Score = 35.1 bits (77), Expect = 1.6
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +1
Query: 256 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 432
+G + TD D++S K ++ + ++ D KGR + I+ + AK +L KV T
Sbjct: 67 NGHIVTDEHIGIDVFDIISFPKIDKHYMILVDEKGRHNEYEISADAAKLQLVKVANKTT 125
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 39.1 bits (87), Expect = 0.096
Identities = 22/79 (27%), Positives = 35/79 (44%)
Frame = +1
Query: 256 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 435
+GK +D P G D+++ + E +R+ GR + I P+ A+ KL K+
Sbjct: 68 NGKAISDEERPVGMFDILAFTEREEYYRVFPGEGGRLALTAIDPDAAQSKLGKIVTKTHV 127
Query: 436 PKNVPYLVTHDGRTIRYPD 492
L HDG T+ D
Sbjct: 128 SGGDVQLGLHDGETLIVED 146
Score = 37.1 bits (82), Expect = 0.39
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +3
Query: 63 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 206
H KRL+ P +W +++ + + GPH +PL+I LR+ L YA
Sbjct: 4 HQKRLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYA 50
>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
Picrophilus torridus|Rep: 30S ribosomal protein S4e -
Picrophilus torridus
Length = 234
Score = 36.7 bits (81), Expect = 0.51
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +3
Query: 489 RPTYQSHDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGT 620
R ++ DS+ + I +I+D +KF GN ITGG ++G + T
Sbjct: 145 RKDIKNGDSVLVKIPKKEIVDVLKFAPGNRVFITGGSHVGEIAT 188
>UniRef50_Q7U147 Cluster: PROBABLE OXIDASE; n=7; Mycobacterium
tuberculosis complex|Rep: PROBABLE OXIDASE -
Mycobacterium bovis
Length = 504
Score = 35.1 bits (77), Expect = 1.6
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = -1
Query: 174 PGASTRATCGDRLTVSVHTHRQVCPTSMLWERLSASNAS*GLAPCWTSI 28
PG RAT GD + VSV T+R PTS+ W ++ N G P +I
Sbjct: 93 PGPLIRATVGDEIVVSV-TNRLGDPTSVHWHGIALRNDMDGTEPATANI 140
>UniRef50_A0LVR4 Cluster: ATPases involved in chromosome
partitioning-like; n=1; Acidothermus cellulolyticus
11B|Rep: ATPases involved in chromosome
partitioning-like - Acidothermus cellulolyticus (strain
ATCC 43068 / 11B)
Length = 433
Score = 34.7 bits (76), Expect = 2.1
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = -2
Query: 653 RRSRDVSRGTRCAHTPQVTASRDHTQVPRLKLDEVHNLRSCDV*LDGIVT 504
RR DV+ CA + A +PRL L+ +H LR+CDV + G+ T
Sbjct: 33 RRCVDVADLLACAAGGTIRAVIVSAGLPRLDLEVLHRLRACDVAVVGVAT 82
>UniRef50_Q57WH1 Cluster: Putative uncharacterized protein; n=6;
Trypanosoma|Rep: Putative uncharacterized protein -
Trypanosoma brucei
Length = 1760
Score = 34.7 bits (76), Expect = 2.1
Identities = 17/70 (24%), Positives = 36/70 (51%)
Frame = +1
Query: 220 NPENCETTPHKGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 399
N E T +G+ +RTDP+Y + V+ +++ L +I++++ F+ + + K
Sbjct: 1039 NEELRRETRRRGECILRTDPSYHSAPSAVIKLQQLIRLEEIIFNMRNNFSNELLKLRDEK 1098
Query: 400 YKLCKVKRVA 429
+LC V+
Sbjct: 1099 ERLCGTLNVS 1108
>UniRef50_Q890E3 Cluster: Acetyltransferase (GNAT) family; n=1;
Lactobacillus plantarum|Rep: Acetyltransferase (GNAT)
family - Lactobacillus plantarum
Length = 163
Score = 34.3 bits (75), Expect = 2.7
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +2
Query: 419 SVWRPDLRMFRTW*RMMAAPSATQTHLSKSRFHPVRHRNYEDYG-LHQV*VWELVYDHG 592
+ WRP+ R W M+ A +A + F P RH NYE +G L+ + V + HG
Sbjct: 46 ATWRPE----RRWQNMLLAMTADGEVVGVCTFGPARHANYEGWGELYSLYVHPNYHHHG 100
>UniRef50_A6E8K7 Cluster: Putative uncharacterized protein; n=1;
Pedobacter sp. BAL39|Rep: Putative uncharacterized
protein - Pedobacter sp. BAL39
Length = 195
Score = 33.9 bits (74), Expect = 3.6
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = -3
Query: 229 FQDSFPVKAYFRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAFKRFK---CF 59
F F KA FR+ +RK+ G+H+ +D A+T PSL H KR++ F
Sbjct: 11 FLGRFFFKARFRKLIRKL--GRHTEVYLVDIDNTLAHTWPSLQQRHYSAENKRYRSLPIF 68
Query: 58 LGPRAML 38
+G R+ L
Sbjct: 69 IGMRSYL 75
>UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
sequence - Ostreococcus tauri
Length = 197
Score = 33.9 bits (74), Expect = 3.6
Identities = 21/67 (31%), Positives = 35/67 (52%)
Frame = -1
Query: 501 DKWVWVADGAAIMRYQVRNILRSGRHTLDFTQLVLSLLRGDTVDCESALNIID*TKQFIS 322
D + V +GAA+++ R+ L QLVL D V ES+L ++D + FI+
Sbjct: 127 DHGIRVTNGAAVVQTDARHALVPELLAPHLAQLVLRFDSLDAVHNESSLGVVDEPEVFIA 186
Query: 321 LLN*DNI 301
L + D++
Sbjct: 187 LFDGDDV 193
>UniRef50_O28859 Cluster: Surface layer protein B; n=1; Archaeoglobus
fulgidus|Rep: Surface layer protein B - Archaeoglobus
fulgidus
Length = 2425
Score = 33.9 bits (74), Expect = 3.6
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 14/95 (14%)
Frame = +1
Query: 211 PETNPENCETTPHKGD-GKVRT--DPTYPA-----GFMDVVSIEKTNELFRLIYDVKGRF 366
PETNP N H+G+ +V+ TYP+ F + +EK E +V+G++
Sbjct: 2322 PETNPTNLREGCHEGNFAEVQNVWVETYPSVTDKNPFWGCIILEKVGE--DRWEEVRGQY 2379
Query: 367 TIHRITPE------EAKYKLCKVKRVATGPKNVPY 453
+ R TP + Y+ C++ R TG ++V Y
Sbjct: 2380 NVKRSTPSSTSYTWDCGYRECQMTRSYTGSRDVTY 2414
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 735,401,770
Number of Sequences: 1657284
Number of extensions: 15412401
Number of successful extensions: 40985
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40968
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52066120554
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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