Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20513
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro...   155   4e-39
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch...   155   7e-39
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos...   154   1e-38
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   3.3  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    25   7.6  

>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
           protein S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score =  155 bits (377), Expect = 4e-39
 Identities = 69/86 (80%), Positives = 76/86 (88%)
 Frame = +1

Query: 250 KGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 429
           K DGKVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV 
Sbjct: 71  KVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQ 130

Query: 430 TGPKNVPYLVTHDGRTIRYPDPLIKV 507
            G K VP+LVTHDGRTIRYPDPLIKV
Sbjct: 131 LGAKGVPFLVTHDGRTIRYPDPLIKV 156



 Score =  107 bits (256), Expect = 2e-24
 Identities = 45/60 (75%), Positives = 50/60 (83%)
 Frame = +3

Query: 42  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 221
           M RGPKKHLKR+ AP  W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1   MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60



 Score = 53.6 bits (123), Expect = 2e-08
 Identities = 23/45 (51%), Positives = 33/45 (73%)
 Frame = +3

Query: 486 PRPTYQSHDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGT 620
           P P  + +D+I+L++ T KI  FIKF++    M+TGGRN+GRVGT
Sbjct: 150 PDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGT 194



 Score = 35.9 bits (79), Expect = 0.005
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = +2

Query: 602 LGACGHIVSRERHPGSFDIVHIKD 673
           +G  G IV RE H GSF+I+H+KD
Sbjct: 189 MGRVGTIVHREHHLGSFEIIHVKD 212


>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score =  155 bits (375), Expect = 7e-39
 Identities = 68/84 (80%), Positives = 75/84 (89%)
 Frame = +1

Query: 256 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 435
           DGKVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV  G
Sbjct: 73  DGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLG 132

Query: 436 PKNVPYLVTHDGRTIRYPDPLIKV 507
            K VP+LVTHDGRTIRYPDPLIKV
Sbjct: 133 AKGVPFLVTHDGRTIRYPDPLIKV 156



 Score =  107 bits (256), Expect = 2e-24
 Identities = 45/60 (75%), Positives = 50/60 (83%)
 Frame = +3

Query: 42  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 221
           M RGPKKHLKR+ AP  W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1   MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60



 Score = 53.6 bits (123), Expect = 2e-08
 Identities = 23/45 (51%), Positives = 33/45 (73%)
 Frame = +3

Query: 486 PRPTYQSHDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGT 620
           P P  + +D+I+L++ T KI  FIKF++    M+TGGRN+GRVGT
Sbjct: 150 PDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGT 194



 Score = 35.9 bits (79), Expect = 0.005
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = +2

Query: 602 LGACGHIVSRERHPGSFDIVHIKD 673
           +G  G IV RE H GSF+I+H+KD
Sbjct: 189 MGRVGTIVHREHHLGSFEIIHVKD 212


>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score =  154 bits (374), Expect = 1e-38
 Identities = 68/86 (79%), Positives = 76/86 (88%)
 Frame = +1

Query: 250 KGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 429
           K DGKVRTD T+P GFMDV+S++KT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV 
Sbjct: 71  KVDGKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQ 130

Query: 430 TGPKNVPYLVTHDGRTIRYPDPLIKV 507
            G K VP+LVTHDGRTIRYPDPLIKV
Sbjct: 131 LGAKGVPFLVTHDGRTIRYPDPLIKV 156



 Score =  107 bits (256), Expect = 2e-24
 Identities = 45/60 (75%), Positives = 50/60 (83%)
 Frame = +3

Query: 42  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 221
           M RGPKKHLKR+ AP  W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1   MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60



 Score = 53.6 bits (123), Expect = 2e-08
 Identities = 23/45 (51%), Positives = 33/45 (73%)
 Frame = +3

Query: 486 PRPTYQSHDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGT 620
           P P  + +D+I+L++ T KI  FIKF++    M+TGGRN+GRVGT
Sbjct: 150 PDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGT 194



 Score = 35.9 bits (79), Expect = 0.005
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = +2

Query: 602 LGACGHIVSRERHPGSFDIVHIKD 673
           +G  G IV RE H GSF+I+H+KD
Sbjct: 189 MGRVGTIVHREHHLGSFEIIHVKD 212


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +1

Query: 301  DVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL-VTHDGRT 477
            +V S+EK N++F + Y+V  +     +   +   K+  ++ ++   KNVP + V H    
Sbjct: 1718 NVSSLEKCNQIFSIFYEVFFQHPSTNVYANDEGIKIGALQIISFFLKNVPEITVQHQTEM 1777

Query: 478  IR 483
            ++
Sbjct: 1778 LK 1779


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 396 SLLRGDTVDCESALNIID*TKQ 331
           S  RGDT D  +ALNI + TK+
Sbjct: 898 STRRGDTDDATTALNIFEETKR 919


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,963,911
Number of Sequences: 5004
Number of extensions: 61634
Number of successful extensions: 145
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)