Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20513
(675 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 132 2e-31
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 129 2e-30
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 128 3e-30
09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078 31 0.84
10_07_0015 + 11813465-11813479,11814342-11814422,11814842-118149... 29 3.4
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 29 3.4
12_02_0513 - 19906147-19906271,19906470-19906791,19907091-199076... 29 4.5
10_08_0105 - 14828097-14828226,14828371-14828547,14829690-148297... 29 4.5
03_05_0206 + 21975077-21975673,21975733-21975831 28 5.9
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 5.9
07_03_1029 + 23379890-23380139,23380506-23381131 28 7.8
04_01_0252 - 3329712-3331061 28 7.8
03_05_0208 + 22006032-22006673,22006695-22007078 28 7.8
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 132 bits (320), Expect = 2e-31
Identities = 60/83 (72%), Positives = 68/83 (81%)
Frame = +1
Query: 256 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 435
DGKVRTD TYPAGFMDVVSI KT E FRL+YD KGRF +H I E+AK+KLCKV+ V G
Sbjct: 89 DGKVRTDKTYPAGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAKFKLCKVRSVQFG 148
Query: 436 PKNVPYLVTHDGRTIRYPDPLIK 504
K +P+L T+DGRTIRYPDPLIK
Sbjct: 149 QKGIPFLNTNDGRTIRYPDPLIK 171
Score = 105 bits (253), Expect = 2e-23
Identities = 46/59 (77%), Positives = 51/59 (86%)
Frame = +3
Query: 45 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 221
ARG KKHLKRLNAP WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT E
Sbjct: 18 ARGLKKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYRE 76
Score = 62.5 bits (145), Expect = 3e-10
Identities = 25/44 (56%), Positives = 36/44 (81%)
Frame = +3
Query: 486 PRPTYQSHDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 617
P P +++D+I++D+ T KI+DFIKF+ GN+ M+TGGRN GRVG
Sbjct: 166 PDPLIKANDTIKIDLETNKIVDFIKFDVGNIVMVTGGRNTGRVG 209
Score = 32.3 bits (70), Expect = 0.36
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +2
Query: 605 GACGHIVSRERHPGSFDIVHIKD 673
G G I SRE+H GSF+ +H++D
Sbjct: 206 GRVGVIKSREKHKGSFETIHVED 228
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 129 bits (312), Expect = 2e-30
Identities = 57/83 (68%), Positives = 67/83 (80%)
Frame = +1
Query: 256 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 435
DGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK+KLCKV+ V G
Sbjct: 73 DGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFG 132
Query: 436 PKNVPYLVTHDGRTIRYPDPLIK 504
K +PYL T+DGRTIRYPDPLIK
Sbjct: 133 QKGIPYLNTYDGRTIRYPDPLIK 155
Score = 108 bits (260), Expect = 3e-24
Identities = 47/60 (78%), Positives = 53/60 (88%)
Frame = +3
Query: 42 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 221
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Score = 62.1 bits (144), Expect = 4e-10
Identities = 25/44 (56%), Positives = 36/44 (81%)
Frame = +3
Query: 486 PRPTYQSHDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 617
P P +++D+I++D+ T KI+DFIKF+ GN+ M+TGGRN GRVG
Sbjct: 150 PDPLIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVG 193
Score = 31.1 bits (67), Expect = 0.84
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +2
Query: 605 GACGHIVSRERHPGSFDIVHIKD 673
G G I +RE+H GSF+ +H++D
Sbjct: 190 GRVGVIKNREKHKGSFETIHVED 212
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 128 bits (310), Expect = 3e-30
Identities = 56/83 (67%), Positives = 67/83 (80%)
Frame = +1
Query: 256 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 435
DGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK+KLCKV+ V G
Sbjct: 73 DGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFG 132
Query: 436 PKNVPYLVTHDGRTIRYPDPLIK 504
K +PYL T+DGRTIRYPDP+IK
Sbjct: 133 QKGIPYLNTYDGRTIRYPDPIIK 155
Score = 108 bits (260), Expect = 3e-24
Identities = 47/60 (78%), Positives = 53/60 (88%)
Frame = +3
Query: 42 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 221
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Score = 62.1 bits (144), Expect = 4e-10
Identities = 25/44 (56%), Positives = 36/44 (81%)
Frame = +3
Query: 486 PRPTYQSHDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 617
P P +++D+I++D+ T KI+DFIKF+ GN+ M+TGGRN GRVG
Sbjct: 150 PDPIIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVG 193
Score = 31.1 bits (67), Expect = 0.84
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +2
Query: 605 GACGHIVSRERHPGSFDIVHIKD 673
G G I +RE+H GSF+ +H++D
Sbjct: 190 GRVGVIKNREKHKGSFETIHVED 212
>09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078
Length = 574
Score = 31.1 bits (67), Expect = 0.84
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 186 SGKSPGASTRATCGDRLTVSVHTHRQVCPTSMLW 85
+G+SPG + RA GD L V+VH T++ W
Sbjct: 50 NGESPGPTIRAAQGDTLVVTVHNMLDTENTAIHW 83
>10_07_0015 +
11813465-11813479,11814342-11814422,11814842-11814951,
11815553-11815608,11816086-11816180,11817021-11817126,
11817261-11817577,11817666-11817848,11817976-11818173,
11819029-11819346,11819721-11819813
Length = 523
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 158 RVLAPGDFPEESSEVCFDRKRILKIVK 238
+VL G P+ESSEV D ILK+++
Sbjct: 468 KVLDEGSSPQESSEVTCDENAILKVME 494
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -3
Query: 199 FRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAFKR 71
F L ++ + L G G+G Y PPSLSN + AFKR
Sbjct: 35 FNVALNRLPASAGASPLLGHGHGVGVYYPPSLSNA-LVAAFKR 76
>12_02_0513 -
19906147-19906271,19906470-19906791,19907091-19907695,
19908569-19908617
Length = 366
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -2
Query: 158 AQLVGTG*RSRCIHTAK-FVQHPCFGSV*ALQMLLRASR 45
++ V G R+RC+H A V+ P FG + ++L ASR
Sbjct: 39 SRAVKAGRRARCVHHASALVRPPSFGRLAMFVLILSASR 77
>10_08_0105 -
14828097-14828226,14828371-14828547,14829690-14829739,
14829841-14829909,14829976-14830074,14830148-14830226,
14830587-14830687,14830794-14830862,14831019-14831059,
14831313-14831663,14831676-14832511,14832674-14832777,
14833587-14834003,14836108-14836491
Length = 968
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -2
Query: 641 DVSRGTRCAHTPQVTASRDHTQVPRLKLDEVHNLRSCD 528
DV+RG C HT T + P L +D ++ CD
Sbjct: 793 DVARGMNCLHTSVPTIVHRDLKSPNLLVDNNWTVKVCD 830
>03_05_0206 + 21975077-21975673,21975733-21975831
Length = 231
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 516 WNRDFDKWVWVADGAAIMR 460
+NR FD WVW +D ++I R
Sbjct: 146 YNRTFDYWVWSSDPSSIPR 164
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 334 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 438
+ LIYD++G + + P++A L ++ V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
>07_03_1029 + 23379890-23380139,23380506-23381131
Length = 291
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 423 CGDRT*ECSVLGNA*WPHHPLPRPTYQSH 509
CG T E S++ W +HP P+P+ H
Sbjct: 161 CGGGTIELSMIKTWLWSNHPQPQPSPPQH 189
>04_01_0252 - 3329712-3331061
Length = 449
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = -1
Query: 150 CGDRLTVSVHTHRQVCPTSMLWERLSASNAS*GLAPCWTSIKSRKKR 10
C D+ V TH+ V P S W+R AS G W S +R
Sbjct: 112 CTDQERVGFATHQLVGPASEWWDRYEASRPE-GHTITWNEFSSVFRR 157
>03_05_0208 + 22006032-22006673,22006695-22007078
Length = 341
Score = 27.9 bits (59), Expect = 7.8
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 516 WNRDFDKWVWVADGAAI 466
+NR FD WVW +D ++I
Sbjct: 156 YNRTFDVWVWTSDPSSI 172
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,589,658
Number of Sequences: 37544
Number of extensions: 451261
Number of successful extensions: 1297
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1297
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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