Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20513
         (675 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)             143   1e-34
SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_46368| Best HMM Match : DUF156 (HMM E-Value=6.5)                    28   6.0  

>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score =  143 bits (346), Expect = 1e-34
 Identities = 66/86 (76%), Positives = 73/86 (84%)
 Frame = +1

Query: 250 KGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 429
           K DGKVRTD TYPAGFMDVV+I+KT E FRL+YDVKGRF +HRIT EEAKYKL +V+RV 
Sbjct: 495 KIDGKVRTDTTYPAGFMDVVTIDKTGENFRLLYDVKGRFAVHRITAEEAKYKLGRVRRVD 554

Query: 430 TGPKNVPYLVTHDGRTIRYPDPLIKV 507
            G K VPY+VTHD RTIRYPDP IKV
Sbjct: 555 VGAKGVPYIVTHDARTIRYPDPNIKV 580



 Score =  122 bits (294), Expect = 3e-28
 Identities = 54/64 (84%), Positives = 58/64 (90%)
 Frame = +3

Query: 42  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 221
           MARGPKKH+KRLNAPK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYAL G E
Sbjct: 425 MARGPKKHMKRLNAPKHWMLDKLSGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALNGEE 484

Query: 222 S*KL 233
             K+
Sbjct: 485 VKKI 488



 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 22/44 (50%), Positives = 35/44 (79%)
 Frame = +3

Query: 486 PRPTYQSHDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 617
           P P  + +D++ +DI T K++D+IKF++GN+ M+ GGRN+GRVG
Sbjct: 574 PDPNIKVNDTVVIDIKTGKVIDYIKFDTGNMAMVVGGRNMGRVG 617



 Score = 37.5 bits (83), Expect = 0.010
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = +2

Query: 602 LGACGHIVSRERHPGSFDIVHIKD 673
           +G  G +  RE+H GSFDIVH+KD
Sbjct: 613 MGRVGMVTHREKHAGSFDIVHVKD 636


>SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1776

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +1

Query: 235 ETTPHKGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGR 363
           E+T  +G G +   P+YP+  ++  ++  +N+LF    +   R
Sbjct: 609 ESTLVRGRGDILISPSYPSALLETTTLITSNQLFNTFIESSTR 651


>SB_46368| Best HMM Match : DUF156 (HMM E-Value=6.5)
          Length = 203

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -3

Query: 184 RKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAF-KRFKCFLGPRAMLDK 32
           RK +R     N++G ++GLG+  PP  + I     F K  K F  PR    K
Sbjct: 60  RKRSRSLPRTNVFGTLNGLGSPPPPRDNRIDEYAEFTKSQKSFTFPRRSKQK 111


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,374,183
Number of Sequences: 59808
Number of extensions: 507991
Number of successful extensions: 1187
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1186
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)