Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20513
         (675 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   121   5e-28
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta...    27   9.2  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  121 bits (291), Expect = 5e-28
 Identities = 55/84 (65%), Positives = 64/84 (76%)
 Frame = +1

Query: 256 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 435
           DGKVRT   +P GFMDVV+IE+TNE FR++YD KGR+ +HRI   EA +KLCKVK V T 
Sbjct: 72  DGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTV 131

Query: 436 PKNVPYLVTHDGRTIRYPDPLIKV 507
            K VP L T DGRTIRYPDP +KV
Sbjct: 132 NKGVPVLTTTDGRTIRYPDPHVKV 155



 Score =  100 bits (239), Expect = 1e-21
 Identities = 46/62 (74%), Positives = 51/62 (82%)
 Frame = +3

Query: 48  RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES* 227
           RGPKKHLKRL AP  WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL   E+ 
Sbjct: 2   RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAK 61

Query: 228 KL 233
           K+
Sbjct: 62  KI 63



 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 26/58 (44%), Positives = 36/58 (62%)
 Frame = +3

Query: 486 PRPTYQSHDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTSCPARDIPAPSTL 659
           P P  + +D+I  +I+T KI D +KFE GNL  +TGGRN+GRVG       +P  S +
Sbjct: 149 PDPHVKVNDTIVFNISTQKITDSVKFEPGNLAYVTGGRNVGRVGIIGHRERLPGASDI 206



 Score = 33.1 bits (72), Expect = 0.19
 Identities = 17/33 (51%), Positives = 20/33 (60%)
 Frame = +2

Query: 575 LVYDHGRP*LGACGHIVSRERHPGSFDIVHIKD 673
           L Y  G   +G  G I  RER PG+ DI+HIKD
Sbjct: 179 LAYVTGGRNVGRVGIIGHRERLPGASDIIHIKD 211


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = +1

Query: 358 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 489
           G+  + R+T  E  Y+ CK+++ A   K VP     Y+V H  R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351


>AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta
            family protein 5 protein.
          Length = 938

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -2

Query: 476  VRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 351
            V P C   Y     PVA  +  H  Y A + ++R   N P T
Sbjct: 880  VNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,788,275
Number of Sequences: 27780
Number of extensions: 362458
Number of successful extensions: 865
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)